The 2.0 version of rSNPBase

Variant report

Variant rs1175629
Chromosome Location chr1:112968254-112968255
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:112942400-112988200 Weak transcription Small Intestine intestine
2 chr1:112946800-112970600 Weak transcription H9 Cell Line embryonic stem cell
3 chr1:112947200-112971200 Weak transcription Aorta Aorta
4 chr1:112947200-112981000 Weak transcription Rectal Smooth Muscle rectum
5 chr1:112951200-112969000 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr1:112951600-112968800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr1:112952000-112969600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr1:112952400-112990600 Weak transcription Esophagus oesophagus
9 chr1:112952600-112981400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
10 chr1:112957400-112986600 Weak transcription NHLF lung
11 chr1:112957600-112997600 Weak transcription Brain Anterior Caudate brain
12 chr1:112958600-112971000 Weak transcription Right Ventricle heart
13 chr1:112958600-112979000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr1:112959600-112973200 Weak transcription Lung lung
15 chr1:112959600-112991600 Weak transcription ES-I3 Cell Line embryonic stem cell
16 chr1:112959800-112972000 Weak transcription Monocytes-CD14+_RO01746 blood
17 chr1:112959800-112973400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
18 chr1:112959800-112992800 Weak transcription Fetal Muscle Trunk muscle
19 chr1:112960000-112972200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr1:112960000-112972800 Weak transcription Left Ventricle heart
21 chr1:112960000-112973200 Weak transcription Ovary ovary
22 chr1:112960000-112974200 Weak transcription Placenta Amnion Placenta Amnion
23 chr1:112960000-112980800 Weak transcription Colon Smooth Muscle Colon
24 chr1:112960000-112981600 Weak transcription Liver Liver
25 chr1:112960000-112995200 Weak transcription Stomach Smooth Muscle stomach
26 chr1:112960000-112996800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
27 chr1:112960200-112978200 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr1:112960200-112979000 Weak transcription GM12878-XiMat blood
29 chr1:112960200-112981200 Weak transcription Duodenum Smooth Muscle Duodenum
30 chr1:112960200-112991600 Weak transcription Hela-S3 cervix
31 chr1:112960400-112991400 Weak transcription HUES6 Cell Line embryonic stem cell
32 chr1:112961200-112995600 Weak transcription Brain Cingulate Gyrus brain
33 chr1:112961400-112979000 Weak transcription Brain Angular Gyrus brain
34 chr1:112961400-112980600 Weak transcription Brain Inferior Temporal Lobe brain
35 chr1:112961600-112981200 Weak transcription Fetal Brain Female brain
36 chr1:112961800-112971000 Weak transcription Fetal Lung lung
37 chr1:112961800-112986800 Weak transcription HMEC breast
38 chr1:112962000-112979600 Weak transcription Fetal Kidney kidney
39 chr1:112962000-112990800 Weak transcription Fetal Brain Male brain
40 chr1:112962200-112976200 Weak transcription Brain Germinal Matrix brain
41 chr1:112962600-112990400 Weak transcription iPS-20b Cell Line embryonic stem cell
42 chr1:112962600-112991600 Weak transcription HUES48 Cell Line embryonic stem cell
43 chr1:112964000-112982200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr1:112964200-112974200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr1:112964600-112968600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr1:112964600-112968800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
47 chr1:112965000-112970000 Strong transcription HUVEC blood vessel
48 chr1:112965400-112968600 Strong transcription Fetal Intestine Small intestine
49 chr1:112965600-112978800 Weak transcription Rectal Mucosa Donor 31 rectum
50 chr1:112965800-112968400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015