The 2.0 version of rSNPBase

Variant report

Variant rs2990989
Chromosome Location chr1:112995347-112995348
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:112957600-112997600 Weak transcription Brain Anterior Caudate brain
2 chr1:112960000-112996800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr1:112961200-112995600 Weak transcription Brain Cingulate Gyrus brain
4 chr1:112965800-112996200 Weak transcription Placenta Placenta
5 chr1:112968600-112995400 Weak transcription Cortex derived primary cultured neurospheres brain
6 chr1:112968600-112995600 Weak transcription Colonic Mucosa Colon
7 chr1:112974000-112997000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
8 chr1:112979600-112998600 Weak transcription Right Ventricle heart
9 chr1:112979600-112998600 Weak transcription Spleen Spleen
10 chr1:112981000-112997200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr1:112981400-113006000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
12 chr1:112981600-112999000 Weak transcription Brain Substantia Nigra brain
13 chr1:112981800-112996600 Weak transcription Liver Liver
14 chr1:112982000-112996800 Weak transcription Rectal Smooth Muscle rectum
15 chr1:112982000-112998800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
16 chr1:112982600-112998600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr1:112982800-112998800 Weak transcription Colon Smooth Muscle Colon
18 chr1:112984400-112995600 Weak transcription Fetal Kidney kidney
19 chr1:112986400-112998600 Weak transcription Aorta Aorta
20 chr1:112987800-112996800 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr1:112987800-112998600 Weak transcription Gastric stomach
22 chr1:112988600-112995400 Weak transcription iPS-15b Cell Line embryonic stem cell
23 chr1:112988600-112998200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr1:112988600-113004200 Weak transcription Fetal Heart heart
25 chr1:112988800-112998200 Weak transcription H9 Cell Line embryonic stem cell
26 chr1:112988800-113008400 Weak transcription A549 lung
27 chr1:112989400-112995400 Weak transcription Lung lung
28 chr1:112989400-112998200 Weak transcription Skeletal Muscle Female skeletal muscle
29 chr1:112989400-112998800 Weak transcription GM12878-XiMat blood
30 chr1:112989400-112999200 Weak transcription Placenta Amnion Placenta Amnion
31 chr1:112989600-112995400 Weak transcription Sigmoid Colon Sigmoid Colon
32 chr1:112989600-112995600 Weak transcription Small Intestine intestine
33 chr1:112989600-113004000 Weak transcription ES-WA7 Cell Line embryonic stem cell
34 chr1:112990000-112996400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr1:112990000-113002800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
36 chr1:112990200-112999000 Weak transcription HepG2 liver
37 chr1:112990400-113001600 Strong transcription iPS-20b Cell Line embryonic stem cell
38 chr1:112990600-112999000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
39 chr1:112990600-113002000 Strong transcription Breast Myoepithelial Primary Cells Breast
40 chr1:112990600-113004600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr1:112990800-112998600 Weak transcription Esophagus oesophagus
42 chr1:112991000-112997000 Weak transcription Dnd41 blood
43 chr1:112991000-112998600 Weak transcription Pancreas Pancrea
44 chr1:112991400-112997200 Weak transcription Fetal Brain Male brain
45 chr1:112991400-112998800 Weak transcription Pancreatic Islets Pancreatic Islet
46 chr1:112992000-112998200 Weak transcription NHEK skin
47 chr1:112992200-112995400 Weak transcription Left Ventricle heart
48 chr1:112992200-112996600 Weak transcription Fetal Brain Female brain
49 chr1:112992600-112996400 Weak transcription HMEC breast
50 chr1:112992600-112997200 Weak transcription Brain Inferior Temporal Lobe brain

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Last update: Aug 31, 2015