The 2.0 version of rSNPBase

Variant report

Variant rs962401
Chromosome Location chr1:112954766-112954767
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:112940000-112956400 Weak transcription Left Ventricle heart
2 chr1:112940000-112961400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:112940200-112958400 Weak transcription Placenta Amnion Placenta Amnion
4 chr1:112940600-112958800 Weak transcription Colonic Mucosa Colon
5 chr1:112940600-112962000 Weak transcription Psoas Muscle Psoas
6 chr1:112940800-112955000 Weak transcription Adipose Nuclei Adipose
7 chr1:112941200-112955000 Weak transcription Duodenum Mucosa Duodenum
8 chr1:112941200-112955000 Weak transcription Fetal Kidney kidney
9 chr1:112941400-112956400 Weak transcription Fetal Intestine Small intestine
10 chr1:112941400-112959400 Weak transcription Brain Germinal Matrix brain
11 chr1:112941600-112959600 Weak transcription Fetal Brain Female brain
12 chr1:112942400-112988200 Weak transcription Small Intestine intestine
13 chr1:112942600-112954800 Weak transcription Fetal Adrenal Gland Adrenal Gland
14 chr1:112942600-112955400 Weak transcription Fetal Intestine Large intestine
15 chr1:112942600-112966400 Weak transcription Spleen Spleen
16 chr1:112942600-112967000 Weak transcription Pancreas Pancrea
17 chr1:112944800-112959000 Weak transcription Brain Hippocampus Middle brain
18 chr1:112945000-112966400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
19 chr1:112946800-112959000 Weak transcription GM12878-XiMat blood
20 chr1:112946800-112960800 Weak transcription Brain Substantia Nigra brain
21 chr1:112946800-112970600 Weak transcription H9 Cell Line embryonic stem cell
22 chr1:112947000-112956800 Weak transcription Brain Anterior Caudate brain
23 chr1:112947200-112956600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
24 chr1:112947200-112958200 Weak transcription Right Ventricle heart
25 chr1:112947200-112959000 Weak transcription Brain Inferior Temporal Lobe brain
26 chr1:112947200-112959200 Weak transcription Ovary ovary
27 chr1:112947200-112961800 Weak transcription A549 lung
28 chr1:112947200-112961800 Weak transcription HepG2 liver
29 chr1:112947200-112971200 Weak transcription Aorta Aorta
30 chr1:112947200-112981000 Weak transcription Rectal Smooth Muscle rectum
31 chr1:112947400-112955600 Weak transcription H1 Cell Line embryonic stem cell
32 chr1:112947400-112965600 Weak transcription ES-WA7 Cell Line embryonic stem cell
33 chr1:112947600-112955200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
34 chr1:112947600-112955400 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr1:112948000-112958600 Weak transcription HMEC breast
36 chr1:112948200-112955200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
37 chr1:112948600-112955000 Weak transcription HSMMtube muscle
38 chr1:112948600-112955800 Weak transcription Placenta Placenta
39 chr1:112949200-112958400 Weak transcription ES-I3 Cell Line embryonic stem cell
40 chr1:112949200-112960600 Weak transcription Brain Angular Gyrus brain
41 chr1:112949200-112963200 Weak transcription Skeletal Muscle Male skeletal muscle
42 chr1:112949200-112966400 Weak transcription iPS-15b Cell Line embryonic stem cell
43 chr1:112949800-112954800 Weak transcription HUES48 Cell Line embryonic stem cell
44 chr1:112949800-112958800 Weak transcription Brain Cingulate Gyrus brain
45 chr1:112950000-112954800 Weak transcription NHLF lung
46 chr1:112950000-112957000 Weak transcription Duodenum Smooth Muscle Duodenum
47 chr1:112950000-112960000 Weak transcription Fetal Lung lung
48 chr1:112950200-112956800 Weak transcription Cortex derived primary cultured neurospheres brain
49 chr1:112950200-112959400 Weak transcription Fetal Brain Male brain
50 chr1:112950400-112954800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015