The 2.0 version of rSNPBase

Variant report

Variant rs2483343
Chromosome Location chr1:112986944-112986945
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:112942400-112988200 Weak transcription Small Intestine intestine
2 chr1:112952400-112990600 Weak transcription Esophagus oesophagus
3 chr1:112957600-112997600 Weak transcription Brain Anterior Caudate brain
4 chr1:112959600-112991600 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr1:112959800-112992800 Weak transcription Fetal Muscle Trunk muscle
6 chr1:112960000-112995200 Weak transcription Stomach Smooth Muscle stomach
7 chr1:112960000-112996800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr1:112960200-112991600 Weak transcription Hela-S3 cervix
9 chr1:112960400-112991400 Weak transcription HUES6 Cell Line embryonic stem cell
10 chr1:112961200-112995600 Weak transcription Brain Cingulate Gyrus brain
11 chr1:112962000-112990800 Weak transcription Fetal Brain Male brain
12 chr1:112962600-112990400 Weak transcription iPS-20b Cell Line embryonic stem cell
13 chr1:112962600-112991600 Weak transcription HUES48 Cell Line embryonic stem cell
14 chr1:112965800-112996200 Weak transcription Placenta Placenta
15 chr1:112967000-112991600 Weak transcription H1 Cell Line embryonic stem cell
16 chr1:112968600-112987400 Weak transcription Fetal Intestine Large intestine
17 chr1:112968600-112987600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr1:112968600-112990600 Weak transcription Fetal Muscle Leg muscle
19 chr1:112968600-112994800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
20 chr1:112968600-112995400 Weak transcription Cortex derived primary cultured neurospheres brain
21 chr1:112968600-112995600 Weak transcription Colonic Mucosa Colon
22 chr1:112972200-112991400 Weak transcription iPS-18 Cell Line embryonic stem cell
23 chr1:112973600-112988800 Weak transcription Lung lung
24 chr1:112974000-112997000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
25 chr1:112976200-112994200 Weak transcription Psoas Muscle Psoas
26 chr1:112979400-112988800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr1:112979600-112990000 Weak transcription Rectal Mucosa Donor 31 rectum
28 chr1:112979600-112990800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
29 chr1:112979600-112998600 Weak transcription Right Ventricle heart
30 chr1:112979600-112998600 Weak transcription Spleen Spleen
31 chr1:112979800-112987400 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr1:112979800-112987600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
33 chr1:112979800-112990800 Weak transcription Duodenum Mucosa Duodenum
34 chr1:112979800-112992000 Weak transcription Brain Angular Gyrus brain
35 chr1:112979800-112992200 Weak transcription Brain Germinal Matrix brain
36 chr1:112980000-112988200 Weak transcription GM12878-XiMat blood
37 chr1:112981000-112997200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr1:112981400-112987200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr1:112981400-112990800 Weak transcription Brain Inferior Temporal Lobe brain
40 chr1:112981400-113006000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr1:112981600-112987400 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr1:112981600-112990600 Weak transcription Fetal Brain Female brain
43 chr1:112981600-112999000 Weak transcription Brain Substantia Nigra brain
44 chr1:112981800-112996600 Weak transcription Liver Liver
45 chr1:112982000-112987400 Weak transcription Sigmoid Colon Sigmoid Colon
46 chr1:112982000-112989200 Weak transcription Placenta Amnion Placenta Amnion
47 chr1:112982000-112996800 Weak transcription Rectal Smooth Muscle rectum
48 chr1:112982000-112998800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
49 chr1:112982200-112988400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr1:112982400-112987600 Weak transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015