Variant report

Variant	rs12679836
Chromosome Location	chr8:91465287-91465288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10086488	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10094978	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10111060	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1015994	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1028255	0.87[CEU][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1033347	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1033348	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12674903	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13268721	0.83[EUR][1000 genomes]
rs2142146	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2142147	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2205150	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2205151	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs2205152	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs2223010	0.87[CEU][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2879361	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35816262	0.82[EUR][1000 genomes]
rs3950221	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs4735190	0.83[EUR][1000 genomes]
rs56784954	0.83[EUR][1000 genomes]
rs6471082	0.89[EUR][1000 genomes]
rs6471083	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6471084	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6471085	0.81[EUR][1000 genomes]
rs6471105	0.90[EUR][1000 genomes]
rs6471113	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs6982329	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6986165	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6988302	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6992512	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6995399	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6998106	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7000724	0.81[EUR][1000 genomes]
rs7002775	0.87[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7017295	0.86[CEU][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7017630	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7821069	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7824956	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9297857	0.87[CEU][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9642910	0.87[CEU][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9643295	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91463400-91465400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:91464000-91465400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:91465200-91465400	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr8:91465200-91467400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links