Variant report

Variant	rs6988302
Chromosome Location	chr8:91477660-91477661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr8:91477341-91477872	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr8:91477435-91477748	MCF10A-Er-Src	breast:	n/a	n/a
3	STAT3	chr8:91477439-91477816	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr8:91477402-91477782	MCF10A-Er-Src	breast:	n/a	n/a
5	MYC	chr8:91477280-91477713	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr8:91477332-91477830	MCF10A-Er-Src	breast:	n/a	n/a
7	MYC	chr8:91477310-91477754	MCF10A-Er-Src	breast:	n/a	n/a
8	STAT3	chr8:91477288-91477812	MCF10A-Er-Src	breast:	n/a	n/a
9	STAT3	chr8:91477452-91477784	MCF10A-Er-Src	breast:	n/a	n/a
10	STAT3	chr8:91477448-91477840	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000265157	TF binding region

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10086488	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10094978	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10111060	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10112242	0.81[CEU][hapmap]
rs1015994	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1028255	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1033347	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1033348	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10504894	0.92[CEU][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes]
rs12545726	0.80[EUR][1000 genomes]
rs12674903	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12678527	0.92[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs12679836	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13268721	0.94[EUR][1000 genomes]
rs2023624	0.80[CEU][hapmap]
rs2105965	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs2142146	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2142147	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2205150	0.85[CEU][hapmap];0.91[CHB][hapmap];0.96[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2205151	0.96[CEU][hapmap];0.91[JPT][hapmap];0.95[EUR][1000 genomes]
rs2205152	0.96[CEU][hapmap];0.91[JPT][hapmap];0.95[EUR][1000 genomes]
rs2223010	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[JPT][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2285231	0.81[EUR][1000 genomes]
rs2879361	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35361206	0.81[EUR][1000 genomes]
rs35816262	0.92[EUR][1000 genomes]
rs3950221	0.96[CEU][hapmap];0.96[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4495387	0.81[CEU][hapmap]
rs4734237	0.81[EUR][1000 genomes]
rs4735190	0.92[EUR][1000 genomes]
rs4735201	0.92[CEU][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs56784954	0.94[EUR][1000 genomes]
rs6471084	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6471085	0.90[EUR][1000 genomes]
rs6471105	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6471113	0.81[CEU][hapmap];0.87[JPT][hapmap];0.85[EUR][1000 genomes]
rs6982329	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6986088	0.81[EUR][1000 genomes]
rs6986165	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6988733	0.81[EUR][1000 genomes]
rs6992512	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6993715	0.86[EUR][1000 genomes]
rs6995399	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6998106	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7000724	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7002775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7017295	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7017630	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs715057	0.81[CEU][hapmap]
rs7812970	0.81[EUR][1000 genomes]
rs7817954	0.81[EUR][1000 genomes]
rs7821069	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7824376	0.92[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs7824511	0.92[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs7824956	0.89[EUR][1000 genomes]
rs7837109	0.81[CEU][hapmap]
rs9297857	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9642910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9643295	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91476800-91480600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr8:91477000-91477800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:91477600-91478000	Weak transcription	Hela-S3	cervix
4	chr8:91477600-91479400	Weak transcription	HMEC	breast
5	chr8:91477600-91479600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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