Variant report

Variant	rs2223010
Chromosome Location	chr8:91480068-91480069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr8:91479737-91480316	HCT-116	colon:	n/a	chr8:91480059-91480070
2	EP300	chr8:91479184-91480341	GM12878	blood:	n/a	chr8:91480074-91480087 chr8:91479422-91479436
3	PAX5	chr8:91479795-91480342	GM12878	blood:	n/a	chr8:91480078-91480087 chr8:91480075-91480084
4	CREB1	chr8:91479912-91480150	A549	lung:	n/a	n/a
5	FOXM1	chr8:91479809-91480258	GM12878	blood:	n/a	n/a
6	STAT3	chr8:91479706-91480578	MCF10A-Er-Src	breast:	n/a	chr8:91480489-91480496 chr8:91480061-91480069
7	POU2F2	chr8:91479737-91480341	GM12891	blood:	n/a	n/a
8	STAT3	chr8:91479891-91480229	GM12878	blood:	n/a	chr8:91480061-91480069
9	FOS	chr8:91479162-91480573	MCF10A-Er-Src	breast:	n/a	chr8:91479884-91479891 chr8:91479883-91479891
10	RCOR1	chr8:91479726-91480551	Hela-S3	cervix:	n/a	n/a
11	MAX	chr8:91479879-91480361	NB4	blood:	n/a	n/a
12	CEBPB	chr8:91479527-91480374	A549	lung:	n/a	chr8:91480059-91480070
13	MAX	chr8:91479870-91480490	Hela-S3	cervix:	n/a	n/a
14	POU2F2	chr8:91479942-91480143	GM12878	blood:	n/a	n/a
15	BCL11A	chr8:91479869-91480242	GM12878	blood:	n/a	chr8:91480075-91480084 chr8:91480078-91480087 chr8:91480121-91480129
16	NR3C1	chr8:91479898-91480283	A549	lung:	n/a	n/a
17	JUND	chr8:91479211-91480543	Hela-S3	cervix:	n/a	chr8:91479884-91479891 chr8:91479883-91479891
18	POLR2A	chr8:91479822-91480562	Hela-S3	cervix:	n/a	n/a
19	CEBPB	chr8:91479761-91480296	GM12878	blood:	n/a	chr8:91480059-91480070
20	ATF2	chr8:91479809-91480203	GM12878	blood:	n/a	n/a
21	MAX	chr8:91479738-91480571	A549	lung:	n/a	n/a
22	RCOR1	chr8:91479787-91480231	GM12878	blood:	n/a	n/a
23	CUX1	chr8:91479923-91480165	GM12878	blood:	n/a	n/a
24	SP1	chr8:91479798-91480522	A549	lung:	n/a	n/a
25	POLR2A	chr8:91479709-91480507	Hela-S3	cervix:	n/a	n/a
26	MXI1	chr8:91479895-91480219	GM12878	blood:	n/a	n/a
27	TAF1	chr8:91479858-91480457	Hela-S3	cervix:	n/a	n/a
28	RFX5	chr8:91479012-91480624	Hela-S3	cervix:	n/a	n/a
29	SPI1	chr8:91479881-91480213	GM12891	blood:	n/a	chr8:91480075-91480084
30	NR3C1	chr8:91479961-91480205	A549	lung:	n/a	n/a
31	CREB1	chr8:91479944-91480287	A549	lung:	n/a	n/a
32	TAF1	chr8:91480023-91480371	Hela-S3	cervix:	n/a	n/a
33	CEBPB	chr8:91479787-91480333	A549	lung:	n/a	chr8:91480059-91480070
34	FOSL2	chr8:91479686-91480389	A549	lung:	n/a	chr8:91479884-91479891 chr8:91479883-91479891
35	GABPA	chr8:91479804-91480327	A549	lung:	n/a	n/a
36	CEBPB	chr8:91479885-91480198	K562	blood:	n/a	chr8:91480059-91480070
37	STAT3	chr8:91479777-91480577	MCF10A-Er-Src	breast:	n/a	chr8:91480489-91480496 chr8:91480061-91480069
38	TBL1XR1	chr8:91479840-91480270	GM12878	blood:	n/a	n/a
39	MYC	chr8:91479873-91480290	NB4	blood:	n/a	n/a
40	SPI1	chr8:91479695-91480456	GM12878	blood:	n/a	chr8:91480075-91480084 chr8:91480236-91480249
41	SP1	chr8:91479871-91480239	GM12878	blood:	n/a	n/a
42	ELK4	chr8:91479939-91480472	Hela-S3	cervix:	n/a	chr8:91480076-91480087
43	EBF1	chr8:91479965-91480214	GM12878	blood:	n/a	n/a
44	MYC	chr8:91479522-91480521	MCF10A-Er-Src	breast:	n/a	n/a
45	MYC	chr8:91479186-91480605	MCF10A-Er-Src	breast:	n/a	n/a
46	MAX	chr8:91479985-91480241	GM12878	blood:	n/a	n/a
47	WRNIP1	chr8:91480010-91480283	GM12878	blood:	n/a	n/a
48	TCF7L2	chr8:91479608-91480571	Hela-S3	cervix:	n/a	n/a
49	ATF2	chr8:91479787-91480269	GM12878	blood:	n/a	n/a
50	CHD2	chr8:91479734-91480529	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91474025..91477020-chr8:91479410..91481404,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265157	TF binding region
ENSG00000265157	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10086488	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10094978	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10111060	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10112242	0.81[CEU][hapmap]
rs1015994	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1028255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1033347	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1033348	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10504894	0.92[CEU][hapmap];0.96[JPT][hapmap];0.85[EUR][1000 genomes]
rs12674903	0.91[EUR][1000 genomes]
rs12678527	0.92[CEU][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes]
rs12679836	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13268721	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2023624	0.80[CEU][hapmap]
rs2105965	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs2142146	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2142147	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2205150	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2205151	0.96[CEU][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2205152	0.96[CEU][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2879361	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35816262	0.91[EUR][1000 genomes]
rs3950221	0.96[CEU][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes]
rs4495387	0.81[CEU][hapmap]
rs4734237	0.80[EUR][1000 genomes]
rs4735190	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4735201	0.92[CEU][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs56784954	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6471084	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6471085	0.88[EUR][1000 genomes]
rs6471105	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6471113	0.81[CEU][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs6982329	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6986088	0.80[EUR][1000 genomes]
rs6986165	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6988302	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[JPT][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6992512	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6993715	0.85[EUR][1000 genomes]
rs6995399	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6998106	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7000724	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7002775	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7017295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7017630	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs715057	0.81[CEU][hapmap]
rs7812970	0.80[EUR][1000 genomes]
rs7821069	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7824376	0.92[CEU][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes]
rs7824511	0.92[CEU][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes]
rs7824956	0.88[EUR][1000 genomes]
rs7837109	0.81[CEU][hapmap]
rs9297857	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9642910	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9643295	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91476800-91480600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr8:91479000-91481000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:91479200-91480600	Enhancers	Liver	Liver
4	chr8:91479400-91480400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:91479400-91480400	Enhancers	GM12878-XiMat	blood
6	chr8:91479400-91480600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:91479400-91480600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr8:91479400-91480600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr8:91479400-91480600	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr8:91479400-91481000	Enhancers	HMEC	breast
11	chr8:91479600-91480400	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr8:91479600-91480400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr8:91479600-91480400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr8:91479600-91480400	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr8:91479600-91480400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr8:91479600-91480400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:91479600-91480400	Flanking Active TSS	A549	lung
18	chr8:91479600-91480400	Enhancers	Dnd41	blood
19	chr8:91479600-91480400	Enhancers	NHLF	lung
20	chr8:91479600-91480600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr8:91479600-91480600	Enhancers	Muscle Satellite Cultured Cells	--
22	chr8:91479600-91480600	Enhancers	NHDF-Ad	bronchial
23	chr8:91479600-91481200	Enhancers	HSMM	muscle
24	chr8:91479800-91480400	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr8:91479800-91480400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr8:91479800-91480400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr8:91479800-91480400	Enhancers	NH-A	brain
28	chr8:91479800-91480600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr8:91479800-91480600	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr8:91480000-91480400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr8:91480000-91480400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr8:91480000-91480400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr8:91480000-91480400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr8:91480000-91480400	Enhancers	Primary T cells fromperipheralblood	blood
35	chr8:91480000-91480400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr8:91480000-91480400	Enhancers	Pancreas	Pancrea
37	chr8:91480000-91480400	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr8:91480000-91480400	Enhancers	Spleen	Spleen
39	chr8:91480000-91480400	Active TSS	Hela-S3	cervix
40	chr8:91480000-91480400	Enhancers	HSMMtube	muscle
41	chr8:91480000-91480400	Enhancers	Osteobl	bone
42	chr8:91480000-91480600	Enhancers	Placenta	Placenta

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