Variant report

Variant	rs4735201
Chromosome Location	chr8:91528313-91528314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91526301..91529082-chr8:144797617..144800391,2	MCF-7	breast:
2	chr8:91513385..91515474-chr8:91527633..91529308,2	K562	blood:
3	chr17:56708558..56710776-chr8:91527605..91529392,2	MCF-7	breast:
4	chr8:91526432..91528878-chr8:91531076..91533715,2	K562	blood:
5	chr8:91518396..91520484-chr8:91527927..91530886,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000212195	Chromatin interaction
ENSG00000181085	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10086488	0.81[EUR][1000 genomes]
rs10094978	0.80[EUR][1000 genomes]
rs10105142	0.85[EUR][1000 genomes]
rs10111060	0.87[GIH][hapmap];0.86[JPT][hapmap];0.89[TSI][hapmap]
rs1028255	0.92[CEU][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs10504894	1.00[CEU][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.98[EUR][1000 genomes]
rs10956720	0.84[EUR][1000 genomes]
rs10956750	0.87[CEU][hapmap]
rs11776824	0.84[EUR][1000 genomes]
rs11784529	0.87[CEU][hapmap]
rs12545726	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12674903	0.87[EUR][1000 genomes]
rs12678527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12680211	0.83[CEU][hapmap];0.84[TSI][hapmap]
rs13254212	0.84[EUR][1000 genomes]
rs13255452	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs13262354	0.87[CEU][hapmap];0.84[TSI][hapmap]
rs13267989	0.84[EUR][1000 genomes]
rs13268594	0.83[CEU][hapmap]
rs13268721	0.88[EUR][1000 genomes]
rs13277387	0.87[CEU][hapmap]
rs1476427	0.91[EUR][1000 genomes]
rs1476428	0.84[EUR][1000 genomes]
rs1858674	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs2023624	0.83[CEU][hapmap]
rs2023626	0.87[CEU][hapmap]
rs2073640	0.87[CEU][hapmap];0.86[TSI][hapmap]
rs2105965	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2105967	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs2157607	0.83[CEU][hapmap]
rs2187981	0.84[EUR][1000 genomes]
rs2187982	0.91[EUR][1000 genomes]
rs2187983	0.83[TSI][hapmap]
rs2205150	0.86[JPT][hapmap]
rs2205151	0.81[ASW][hapmap];0.96[CEU][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.91[TSI][hapmap];0.94[YRI][hapmap];0.89[EUR][1000 genomes]
rs2205152	0.95[CEU][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs2213886	0.91[EUR][1000 genomes]
rs2223010	0.92[CEU][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs2285231	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2879361	0.85[EUR][1000 genomes]
rs34126139	0.84[EUR][1000 genomes]
rs35159732	0.81[EUR][1000 genomes]
rs35361206	0.90[EUR][1000 genomes]
rs35816262	0.91[EUR][1000 genomes]
rs3950221	0.96[CEU][hapmap];0.87[JPT][hapmap];0.94[YRI][hapmap];0.89[EUR][1000 genomes]
rs4140679	0.87[TSI][hapmap]
rs4495387	0.91[CEU][hapmap]
rs4734237	0.84[EUR][1000 genomes]
rs4734250	0.84[TSI][hapmap]
rs4734269	0.87[CEU][hapmap]
rs4735190	0.91[EUR][1000 genomes]
rs4735210	0.84[EUR][1000 genomes]
rs4735230	0.84[EUR][1000 genomes]
rs56784954	0.90[EUR][1000 genomes]
rs6471085	0.83[EUR][1000 genomes]
rs6471113	0.81[CEU][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6986001	0.83[CEU][hapmap]
rs6986088	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6986165	0.87[GIH][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap]
rs6986359	0.82[TSI][hapmap]
rs6986689	0.87[CEU][hapmap]
rs6988302	0.92[CEU][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs6988733	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6989123	0.91[EUR][1000 genomes]
rs6993715	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6995399	0.85[EUR][1000 genomes]
rs6999898	0.83[CEU][hapmap]
rs7000724	0.94[EUR][1000 genomes]
rs7002775	0.92[CEU][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs7008765	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs7013893	0.84[EUR][1000 genomes]
rs7017295	0.92[CEU][hapmap];0.92[GIH][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs7017630	0.85[EUR][1000 genomes]
rs7812970	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7817954	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7823461	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs7824376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7824511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7826178	0.83[CEU][hapmap]
rs7837230	0.84[EUR][1000 genomes]
rs7840846	0.84[EUR][1000 genomes]
rs9297857	0.92[CEU][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs9642910	0.92[CEU][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs9643298	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981885	chr8:91528144-91537088	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91522000-91532400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:91524000-91529200	Weak transcription	K562	blood

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