Variant report

Variant	rs2073640
Chromosome Location	chr8:91594853-91594854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91594033..91595914-chr8:91702199..91704842,2	MCF-7	breast:
2	chr8:91592321..91595028-chr8:91900855..91903114,2	MCF-7	breast:
3	chr8:91594458..91596595-chr8:91604272..91606928,3	MCF-7	breast:
4	chr8:91593180..91595873-chr8:91597384..91599747,2	MCF-7	breast:
5	chr8:91592182..91594210-chr8:91594648..91596923,2	K562	blood:
6	chr8:91593469..91595220-chr8:91599525..91601715,2	K562	blood:
7	chr8:91591742..91600378-chr8:91654152..91660927,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180694	Chromatin interaction
ENSG00000246792	Chromatin interaction

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10086401	0.90[ASN][1000 genomes]
rs10086462	0.85[ASN][1000 genomes]
rs10091275	0.90[ASN][1000 genomes]
rs10103198	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10105142	0.80[EUR][1000 genomes]
rs10112242	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10283086	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10504894	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs10808619	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10808620	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10956720	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10956730	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10956736	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10956748	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10956749	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10956750	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11776824	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11779312	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11784529	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12545279	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12545351	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12545726	0.86[EUR][1000 genomes]
rs12547016	0.90[ASN][1000 genomes]
rs12548741	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12548806	0.90[ASN][1000 genomes]
rs12678527	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs12680211	0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13254212	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13255452	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13262354	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13266461	0.83[CEU][hapmap]
rs13267237	0.84[ASN][1000 genomes]
rs13267989	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13268594	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13277387	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap]
rs13279222	0.85[EUR][1000 genomes]
rs13279263	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1476427	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1476428	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16905041	0.88[CEU][hapmap];0.95[CHB][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1858673	0.90[ASN][1000 genomes]
rs1858674	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2023624	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2023626	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2105965	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[EUR][1000 genomes]
rs2105967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2105968	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2157607	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2187981	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2187982	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2205151	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs2205152	0.87[CEU][hapmap];0.81[TSI][hapmap]
rs2213886	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2285231	0.87[EUR][1000 genomes]
rs2285232	0.90[ASN][1000 genomes]
rs2285233	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34126139	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35159732	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35409073	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36046037	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3950221	0.83[CEU][hapmap]
rs4140679	0.86[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4140680	0.80[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4495386	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4495387	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4734250	0.86[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734266	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4734268	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4734269	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4735201	0.87[CEU][hapmap];0.86[TSI][hapmap]
rs4735210	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4735230	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4735236	0.80[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs4735256	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4735260	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4735268	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4735295	0.84[CEU][hapmap]
rs5005585	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62526886	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6986001	0.96[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6986088	0.87[EUR][1000 genomes]
rs6986359	0.92[CEU][hapmap];0.82[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6986689	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6988733	0.86[EUR][1000 genomes]
rs6989123	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6993715	0.81[EUR][1000 genomes]
rs6998150	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6999898	0.96[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7004287	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7006279	0.92[ASN][1000 genomes]
rs7007102	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7007129	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7008765	0.96[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7013893	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7014073	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7014967	0.90[ASN][1000 genomes]
rs7016220	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7017295	0.81[TSI][hapmap]
rs715057	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7463641	0.83[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs756568	0.90[ASN][1000 genomes]
rs756569	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7812970	0.87[EUR][1000 genomes]
rs7817954	0.86[EUR][1000 genomes]
rs7819519	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7823461	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7824376	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs7824511	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs7826178	0.96[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7837109	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7837230	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7840846	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9297871	0.90[ASN][1000 genomes]
rs9643298	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9643307	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9643308	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9693182	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9694450	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91590600-91597800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr8:91593200-91596800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:91593600-91595600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:91593600-91595800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr8:91593800-91596600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr8:91593800-91597000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr8:91594000-91597400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr8:91594600-91595600	Weak transcription	K562	blood
9	chr8:91594600-91621600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:91594800-91595000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr8:91594800-91595800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:91594800-91595800	Weak transcription	Fetal Heart	heart

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