Variant report

Variant	rs7004287
Chromosome Location	chr8:91620842-91620843
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:91620738-91621042	ProgFib	skin:	n/a	n/a
2	POLR2A	chr8:91620458-91624767	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr8:91614062..91616236-chr8:91620132..91623059,2	K562	blood:
2	chr8:91619777..91622363-chr8:91625498..91627385,2	MCF-7	breast:
3	chr8:91613334..91617171-chr8:91619742..91623247,5	MCF-7	breast:
4	chr8:91614062..91617151-chr8:91620132..91623059,3	K562	blood:

Variant related genes	Relation type
LINC01030	TF binding region

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10086401	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10086462	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10091275	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10103198	0.88[ASN][1000 genomes]
rs10112242	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10283086	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10808619	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10808620	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956720	0.87[ASN][1000 genomes]
rs10956730	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10956736	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10956748	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10956749	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10956750	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11776824	0.90[ASN][1000 genomes]
rs11779312	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11784529	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12545279	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12545351	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12545726	0.83[EUR][1000 genomes]
rs12547016	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12548741	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12548806	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12680211	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13254212	0.89[ASN][1000 genomes]
rs13255452	0.89[ASN][1000 genomes]
rs13262354	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13267237	0.81[ASN][1000 genomes]
rs13267989	0.88[ASN][1000 genomes]
rs13268594	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13279222	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13279263	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1476427	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1476428	0.90[ASN][1000 genomes]
rs16905041	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1858673	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1858674	0.88[ASN][1000 genomes]
rs2023624	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2023626	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2073640	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2105965	0.84[EUR][1000 genomes]
rs2105967	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2105968	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2157607	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2187981	0.90[ASN][1000 genomes]
rs2187982	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2213886	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2285231	0.84[EUR][1000 genomes]
rs2285232	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2285233	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34126139	0.87[ASN][1000 genomes]
rs35159732	0.81[EUR][1000 genomes]
rs35409073	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36046037	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4140679	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4140680	0.86[ASN][1000 genomes]
rs4495386	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4495387	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4734237	0.90[EUR][1000 genomes]
rs4734250	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4734266	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734268	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734269	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4735210	0.90[ASN][1000 genomes]
rs4735230	0.87[ASN][1000 genomes]
rs4735236	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4735256	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4735260	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4735268	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5005585	0.89[ASN][1000 genomes]
rs62526886	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6986001	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6986088	0.84[EUR][1000 genomes]
rs6986359	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6986689	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6988733	0.83[EUR][1000 genomes]
rs6989123	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6998150	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6999898	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7000724	0.82[EUR][1000 genomes]
rs7006279	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7007102	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7007129	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008172	0.83[EUR][1000 genomes]
rs7008765	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7012741	0.82[EUR][1000 genomes]
rs7013893	0.87[ASN][1000 genomes]
rs7014073	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7014967	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7016220	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs715057	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7463641	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs756568	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs756569	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7812970	0.84[EUR][1000 genomes]
rs7817954	0.83[EUR][1000 genomes]
rs7819519	0.87[ASN][1000 genomes]
rs7823461	0.88[ASN][1000 genomes]
rs7826178	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7837109	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7837230	0.87[ASN][1000 genomes]
rs7840846	0.87[ASN][1000 genomes]
rs9297871	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9643298	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9643307	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9643308	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9693182	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9694450	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91594600-91621600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:91606600-91621800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:91606600-91627600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:91614400-91621200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:91617000-91628600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr8:91617400-91621600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:91617400-91628600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:91618200-91631600	Weak transcription	Stomach Mucosa	stomach
9	chr8:91619000-91628600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:91620000-91623800	Weak transcription	Pancreas	Pancrea
11	chr8:91620000-91627200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:91620000-91630000	Weak transcription	HSMMtube	muscle
13	chr8:91620400-91622000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:91620400-91628400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr8:91620400-91628400	Weak transcription	Brain Hippocampus Middle	brain
16	chr8:91620400-91630800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr8:91620400-91652200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr8:91620600-91621400	Enhancers	Primary B cells from peripheral blood	blood
19	chr8:91620800-91621600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr8:91620800-91621600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links