Variant report

Variant	rs7000724
Chromosome Location	chr8:91516335-91516336
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91516242..91518004-chr8:91537663..91540074,2	MCF-7	breast:
2	chr8:91012056..91014977-chr8:91512985..91517287,3	MCF-7	breast:
3	chr8:91515837..91516882-chr8:91582882..91583540,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104325	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10086401	0.82[EUR][1000 genomes]
rs10086462	0.82[EUR][1000 genomes]
rs10086488	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10091275	0.82[EUR][1000 genomes]
rs10094978	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10105142	0.82[EUR][1000 genomes]
rs10111060	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10112242	0.82[EUR][1000 genomes]
rs1015994	0.81[EUR][1000 genomes]
rs1028255	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10283086	0.82[EUR][1000 genomes]
rs1033347	0.80[EUR][1000 genomes]
rs1033348	0.80[EUR][1000 genomes]
rs10504894	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10808619	0.82[EUR][1000 genomes]
rs10808620	0.82[EUR][1000 genomes]
rs10956720	0.82[EUR][1000 genomes]
rs11776824	0.81[EUR][1000 genomes]
rs12545351	0.83[EUR][1000 genomes]
rs12545726	0.88[EUR][1000 genomes]
rs12547016	0.82[EUR][1000 genomes]
rs12548806	0.82[EUR][1000 genomes]
rs12674903	0.85[EUR][1000 genomes]
rs12678527	0.96[EUR][1000 genomes]
rs12679836	0.81[EUR][1000 genomes]
rs13254212	0.82[EUR][1000 genomes]
rs13255452	0.82[EUR][1000 genomes]
rs13267989	0.82[EUR][1000 genomes]
rs13268721	0.86[EUR][1000 genomes]
rs1476427	0.88[EUR][1000 genomes]
rs1476428	0.81[EUR][1000 genomes]
rs1858673	0.82[EUR][1000 genomes]
rs1858674	0.81[EUR][1000 genomes]
rs2023624	0.82[EUR][1000 genomes]
rs2105965	0.89[EUR][1000 genomes]
rs2142146	0.80[EUR][1000 genomes]
rs2142147	0.82[EUR][1000 genomes]
rs2187981	0.81[EUR][1000 genomes]
rs2187982	0.88[EUR][1000 genomes]
rs2205150	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2205151	0.86[EUR][1000 genomes]
rs2205152	0.86[EUR][1000 genomes]
rs2213886	0.88[EUR][1000 genomes]
rs2223010	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2285231	0.89[EUR][1000 genomes]
rs2285232	0.82[EUR][1000 genomes]
rs2879361	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34126139	0.82[EUR][1000 genomes]
rs35361206	0.87[EUR][1000 genomes]
rs35816262	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3950221	0.86[EUR][1000 genomes]
rs4734237	0.90[EUR][1000 genomes]
rs4734268	0.82[EUR][1000 genomes]
rs4735190	0.88[EUR][1000 genomes]
rs4735201	0.94[EUR][1000 genomes]
rs4735210	0.81[EUR][1000 genomes]
rs4735230	0.82[EUR][1000 genomes]
rs56784954	0.87[EUR][1000 genomes]
rs6471085	0.81[EUR][1000 genomes]
rs6471105	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6471113	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6982329	0.81[EUR][1000 genomes]
rs6986088	0.89[EUR][1000 genomes]
rs6986165	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6986359	0.82[EUR][1000 genomes]
rs6988302	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6988733	0.89[EUR][1000 genomes]
rs6989123	0.88[EUR][1000 genomes]
rs6992512	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6993715	0.94[EUR][1000 genomes]
rs6995399	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6998106	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7002775	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7004287	0.82[EUR][1000 genomes]
rs7007129	0.82[EUR][1000 genomes]
rs7012741	0.82[EUR][1000 genomes]
rs7013893	0.82[EUR][1000 genomes]
rs7014073	0.82[EUR][1000 genomes]
rs7014967	0.82[EUR][1000 genomes]
rs7017295	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7017630	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs715057	0.82[EUR][1000 genomes]
rs756568	0.82[EUR][1000 genomes]
rs7812970	0.89[EUR][1000 genomes]
rs7817954	0.89[EUR][1000 genomes]
rs7821069	0.81[EUR][1000 genomes]
rs7823461	0.82[EUR][1000 genomes]
rs7824376	0.96[EUR][1000 genomes]
rs7824511	0.96[EUR][1000 genomes]
rs7824956	0.81[EUR][1000 genomes]
rs7837109	0.83[EUR][1000 genomes]
rs7837230	0.82[EUR][1000 genomes]
rs7840846	0.82[EUR][1000 genomes]
rs9297857	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9297871	0.82[EUR][1000 genomes]
rs9642910	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9643295	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9643298	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2621133	chr8:91515761-91517085	Weak transcription Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91510000-91516600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:91514200-91516400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:91515400-91516600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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