Variant report

Variant	rs9297857
Chromosome Location	chr8:91480964-91480965
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91474025..91477020-chr8:91479410..91481404,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265157	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10086488	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10094978	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10111060	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10112242	0.81[CEU][hapmap]
rs1015994	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1028255	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1033347	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1033348	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10504894	0.92[CEU][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes]
rs12674903	0.91[EUR][1000 genomes]
rs12678527	0.92[CEU][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs12679836	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13268721	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2023624	0.80[CEU][hapmap]
rs2105965	0.81[CEU][hapmap]
rs2142146	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2142147	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2205150	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2205151	0.96[CEU][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2205152	0.96[CEU][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2223010	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2879361	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35816262	0.91[EUR][1000 genomes]
rs3950221	0.96[CEU][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes]
rs4495387	0.81[CEU][hapmap]
rs4735190	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4735201	0.92[CEU][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs56784954	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6471084	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6471085	0.88[EUR][1000 genomes]
rs6471105	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6471113	0.81[CEU][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs6982329	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6986165	0.84[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6988302	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6992512	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6993715	0.84[EUR][1000 genomes]
rs6995399	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998106	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7000724	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7002775	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7017295	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017630	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs715057	0.81[CEU][hapmap]
rs7821069	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7824376	0.92[CEU][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs7824511	0.92[CEU][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs7824956	0.87[EUR][1000 genomes]
rs7837109	0.81[CEU][hapmap]
rs9642910	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9643295	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91479000-91481000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:91479400-91481000	Enhancers	HMEC	breast
3	chr8:91479600-91481200	Enhancers	HSMM	muscle
4	chr8:91480400-91481800	Enhancers	Hela-S3	cervix
5	chr8:91480400-91483400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:91480400-91483600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:91480400-91483600	Weak transcription	NH-A	brain
8	chr8:91480400-91483800	Weak transcription	Osteobl	bone
9	chr8:91480600-91481200	Weak transcription	Placenta	Placenta
10	chr8:91480600-91483600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr8:91480600-91483600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr8:91480600-91483600	Weak transcription	NHDF-Ad	bronchial
13	chr8:91480600-91484000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:91480600-91484800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:91480600-91491200	Weak transcription	Liver	Liver
16	chr8:91480800-91483600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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