Variant report

Variant	rs7821069
Chromosome Location	chr8:91465548-91465549
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10086488	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10094978	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10111060	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.88[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1015994	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1028255	0.84[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1033347	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1033348	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10504894	0.91[JPT][hapmap]
rs10956730	0.80[CEU][hapmap];0.83[YRI][hapmap]
rs12674903	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12678527	0.82[JPT][hapmap]
rs12679836	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13268721	0.83[EUR][1000 genomes]
rs2023624	0.83[YRI][hapmap]
rs2105968	0.80[CEU][hapmap];0.83[YRI][hapmap]
rs2142146	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2142147	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2205150	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2205151	0.81[CEU][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs2205152	0.80[CEU][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs2223010	0.84[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2879361	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35816262	0.82[EUR][1000 genomes]
rs3950221	0.81[CEU][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs4140679	0.80[CEU][hapmap]
rs4734250	0.80[CEU][hapmap];0.83[YRI][hapmap]
rs4735190	0.83[EUR][1000 genomes]
rs4735201	0.87[GIH][hapmap];0.82[JPT][hapmap];0.82[TSI][hapmap]
rs4735236	0.82[YRI][hapmap]
rs56784954	0.82[EUR][1000 genomes]
rs6471082	0.90[EUR][1000 genomes]
rs6471083	0.89[EUR][1000 genomes]
rs6471084	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6471085	0.80[EUR][1000 genomes]
rs6471105	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6471113	0.96[CEU][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6982329	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6986165	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6988302	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6992512	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6995399	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6998106	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7000724	0.81[EUR][1000 genomes]
rs7002775	0.84[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7016220	0.83[YRI][hapmap]
rs7017295	0.84[CEU][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7017630	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7824376	0.82[JPT][hapmap]
rs7824511	0.82[JPT][hapmap]
rs7824956	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9297857	0.84[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9642910	0.84[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9643295	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91465200-91467400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:91465400-91466800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:91465400-91466800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links