Variant report

Variant	rs10956730
Chromosome Location	chr8:91597428-91597429
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91589066..91593133-chr8:91594957..91599269,5	MCF-7	breast:
2	chr8:91595036..91598332-chr8:91602529..91606248,4	K562	blood:
3	chr8:91582933..91584616-chr8:91596175..91598314,2	K562	blood:
4	chr8:91593180..91595873-chr8:91597384..91599747,2	MCF-7	breast:
5	chr8:91595033..91601629-chr8:91657175..91661536,6	MCF-7	breast:
6	chr8:91597092..91599824-chr8:91609120..91610741,2	K562	blood:
7	chr8:91596652..91598332-chr8:91603771..91606248,2	K562	blood:
8	chr8:91591742..91600378-chr8:91654152..91660927,12	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000246792	Chromatin interaction
ENSG00000180694	Chromatin interaction

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10086401	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10086462	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10091275	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10103198	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10105142	0.86[EUR][1000 genomes]
rs10111060	0.80[CEU][hapmap];0.83[YRI][hapmap]
rs10112242	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10283086	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10808619	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10808620	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10956720	0.91[ASN][1000 genomes]
rs10956736	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10956748	0.90[ASN][1000 genomes]
rs10956749	0.90[ASN][1000 genomes]
rs10956750	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11776824	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11779312	0.85[ASN][1000 genomes]
rs11784529	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12545279	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12545351	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12547016	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12548741	0.90[ASN][1000 genomes]
rs12548806	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12680211	0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13254212	0.93[ASN][1000 genomes]
rs13255452	0.86[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs13262354	0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13267237	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13267989	0.92[ASN][1000 genomes]
rs13268594	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13277387	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs13279222	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13279263	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1476427	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1476428	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16905041	0.82[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.88[ASN][1000 genomes]
rs1858673	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1858674	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2023624	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2023626	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2073640	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2105965	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs2105967	0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2105968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2157607	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2187981	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2187982	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2205150	0.82[CEU][hapmap];0.84[YRI][hapmap]
rs2213886	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2285232	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2285233	0.91[ASN][1000 genomes]
rs34126139	0.90[ASN][1000 genomes]
rs35409073	0.87[ASN][1000 genomes]
rs36046037	0.91[ASN][1000 genomes]
rs4140679	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4140680	0.86[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4495386	0.90[ASN][1000 genomes]
rs4495387	0.85[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4734237	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4734250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734266	0.90[ASN][1000 genomes]
rs4734268	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4734269	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4735210	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4735230	0.90[ASN][1000 genomes]
rs4735236	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4735256	0.90[ASN][1000 genomes]
rs4735260	0.90[ASN][1000 genomes]
rs4735268	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs5005585	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62526886	0.90[ASN][1000 genomes]
rs6471113	0.85[CEU][hapmap];0.84[YRI][hapmap];0.84[EUR][1000 genomes]
rs6986001	0.82[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6986088	0.80[ASN][1000 genomes]
rs6986165	0.80[CEU][hapmap]
rs6986359	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6986689	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6988733	0.80[ASN][1000 genomes]
rs6989123	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6998150	0.87[ASN][1000 genomes]
rs6999898	0.82[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7004287	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7006279	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7007102	0.90[ASN][1000 genomes]
rs7007129	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7008172	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7008765	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7012741	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7013893	0.90[ASN][1000 genomes]
rs7014073	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7014967	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7016220	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs715057	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7463641	0.81[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs756568	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs756569	0.90[ASN][1000 genomes]
rs7812970	0.80[ASN][1000 genomes]
rs7817954	0.80[ASN][1000 genomes]
rs7819519	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7823461	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs7826178	0.82[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7837109	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7837230	0.90[ASN][1000 genomes]
rs7840846	0.90[ASN][1000 genomes]
rs9297871	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9643298	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9643307	0.90[ASN][1000 genomes]
rs9643308	0.90[ASN][1000 genomes]
rs9693182	0.90[ASN][1000 genomes]
rs9694450	0.90[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91590600-91597800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr8:91594600-91621600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:91595600-91597600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:91596800-91597600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr8:91597000-91597600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr8:91597400-91597600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr8:91597400-91601800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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