Variant report

Variant	rs7008172
Chromosome Location	chr8:91551613-91551614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91545718..91547242-chr8:91550025..91552385,2	MCF-7	breast:
2	chr8:91551402..91553580-chr8:91557141..91559345,2	MCF-7	breast:
3	chr8:91015944..91018143-chr8:91550446..91553140,2	K562	blood:
4	chr8:91532164..91534929-chr8:91551181..91553248,2	MCF-7	breast:
5	chr8:91546503..91548610-chr8:91549593..91551620,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10086401	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10086462	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10086488	0.80[EUR][1000 genomes]
rs10091275	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10103198	0.84[EUR][1000 genomes]
rs10105142	0.89[EUR][1000 genomes]
rs10111060	0.80[CEU][hapmap]
rs10112242	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs10283086	0.83[EUR][1000 genomes]
rs10808619	0.82[EUR][1000 genomes]
rs10808620	0.82[EUR][1000 genomes]
rs10956730	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10956736	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11776824	0.90[EUR][1000 genomes]
rs12545351	0.83[EUR][1000 genomes]
rs12545726	0.80[EUR][1000 genomes]
rs12547016	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12548806	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13267237	0.85[EUR][1000 genomes]
rs1476427	0.83[EUR][1000 genomes]
rs1476428	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16905041	0.82[CEU][hapmap]
rs17714589	1.00[YRI][hapmap]
rs1858673	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2023624	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2105965	0.81[EUR][1000 genomes]
rs2105968	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2187981	0.90[EUR][1000 genomes]
rs2187982	0.83[EUR][1000 genomes]
rs2187983	0.88[CHB][hapmap];0.83[AFR][1000 genomes]
rs2205150	0.82[CEU][hapmap]
rs2213886	0.83[EUR][1000 genomes]
rs2285231	0.82[EUR][1000 genomes]
rs2285232	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4140679	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4140680	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs4734237	0.87[EUR][1000 genomes]
rs4734250	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4734268	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4735210	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4735236	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs5005585	0.84[EUR][1000 genomes]
rs6471113	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs6986001	0.82[CEU][hapmap]
rs6986088	0.81[EUR][1000 genomes]
rs6986165	0.80[CEU][hapmap]
rs6986359	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs6988733	0.81[EUR][1000 genomes]
rs6989123	0.83[EUR][1000 genomes]
rs6999898	0.82[CEU][hapmap]
rs7004287	0.83[EUR][1000 genomes]
rs7006279	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7007129	0.83[EUR][1000 genomes]
rs7012741	0.93[EUR][1000 genomes]
rs7014073	0.83[EUR][1000 genomes]
rs7014967	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7016220	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs715057	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs7463641	0.81[CEU][hapmap]
rs756568	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7812970	0.81[EUR][1000 genomes]
rs7817954	0.81[EUR][1000 genomes]
rs7819519	0.84[EUR][1000 genomes]
rs7826178	0.82[CEU][hapmap]
rs7837109	0.86[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9297871	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9643298	0.83[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91544800-91552400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:91546800-91552800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:91547000-91552600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:91547000-91557400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:91549400-91553000	Weak transcription	HSMMtube	muscle
6	chr8:91549400-91553000	Weak transcription	NHDF-Ad	bronchial
7	chr8:91549400-91554800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:91549400-91554800	Weak transcription	NHLF	lung
9	chr8:91549600-91552800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:91549600-91552800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr8:91549600-91552800	Weak transcription	Osteobl	bone
12	chr8:91549600-91553000	Weak transcription	NH-A	brain
13	chr8:91549600-91553600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:91549600-91553600	Weak transcription	Hela-S3	cervix
15	chr8:91549800-91553000	Weak transcription	HUVEC	blood vessel
16	chr8:91550000-91552400	Weak transcription	HSMM	muscle
17	chr8:91550000-91552600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr8:91550000-91552800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:91550000-91553000	Weak transcription	HMEC	breast
20	chr8:91550000-91553600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:91551200-91553000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:91551200-91555600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:91551400-91554800	Weak transcription	Fetal Stomach	stomach

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