Variant report

Variant	rs10808620
Chromosome Location	chr8:91622940-91622941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:27)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:27 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chr8:91622851-91623045	Hela-S3	cervix:	n/a	n/a
2	CTCF	chr8:91622900-91623050	HMF	breast:	n/a	n/a
3	CTCF	chr8:91622840-91622990	AG09309	skin:	n/a	n/a
4	CTCF	chr8:91622840-91622990	MCF-7	breast:	n/a	n/a
5	CTCF	chr8:91622840-91622990	HBMEC	blood vessel:	n/a	n/a
6	CTCF	chr8:91622891-91622965	HUVEC	blood vessel:	n/a	n/a
7	CTCF	chr8:91622820-91622970	HVMF	connective:	n/a	n/a
8	CTCF	chr8:91622870-91623018	K562	blood:	n/a	n/a
9	CTCF	chr8:91622880-91623170	HPF	lung:	n/a	n/a
10	MXI1	chr8:91622915-91623004	Hela-S3	cervix:	n/a	n/a
11	CTCF	chr8:91622824-91622992	HepG2	liver:	n/a	n/a
12	RAD21	chr8:91622853-91623120	IMR90	lung:	n/a	n/a
13	CTCF	chr8:91622880-91623030	HCPEpiC	choroid plexus:	n/a	n/a
14	CTCF	chr8:91622883-91622999	Hela-S3	cervix:	n/a	n/a
15	E2F6	chr8:91622735-91623187	H1-hESC	embryonic stem cell:	n/a	n/a
16	CTCF	chr8:91622853-91623021	K562	blood:	n/a	n/a
17	CTCF	chr8:91622822-91623065	Spleen_OC	spleen:	n/a	n/a
18	RAD21	chr8:91622759-91623030	SK-N-SH_RA	brain:	n/a	n/a
19	POLR2A	chr8:91620458-91624767	MCF-7	breast:	n/a	n/a
20	CTCF	chr8:91622860-91623010	K562	blood:	n/a	n/a
21	RAD21	chr8:91622834-91622996	SK-N-SH_RA	brain:	n/a	n/a
22	CTCF	chr8:91622924-91622977	GM12878	blood:	n/a	n/a
23	RAD21	chr8:91622814-91622999	Hela-S3	cervix:	n/a	n/a
24	CTCF	chr8:91622860-91623010	HCPEpiC	choroid plexus:	n/a	n/a
25	CTCF	chr8:91622925-91622955	MCF-7	breast:	n/a	n/a
26	CTCF	chr8:91622800-91622950	MCF-7	breast:	n/a	n/a
27	CTCF	chr8:91622793-91623095	IMR90	lung:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91614062..91616236-chr8:91620132..91623059,2	K562	blood:
2	chr8:91621323..91626406-chr8:91655507..91659501,5	MCF-7	breast:
3	chr8:91621172..91624460-chr8:91656090..91658509,4	MCF-7	breast:
4	chr8:90996675..90999538-chr8:91621652..91623385,2	MCF-7	breast:
5	chr8:91613334..91617171-chr8:91619742..91623247,5	MCF-7	breast:
6	chr8:91614062..91617151-chr8:91620132..91623059,3	K562	blood:

No data

Variant related genes	Relation type
LINC01030	TF binding region
ENSG00000180694	Chromatin interaction
ENSG00000246792	Chromatin interaction
ENSG00000104320	Chromatin interaction

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10086401	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10086462	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10091275	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10103198	0.88[ASN][1000 genomes]
rs10112242	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10283086	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10808619	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956720	0.87[ASN][1000 genomes]
rs10956730	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10956736	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10956748	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10956749	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10956750	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11776824	0.90[ASN][1000 genomes]
rs11779312	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11784529	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12545279	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12545351	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12545726	0.82[EUR][1000 genomes]
rs12547016	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12548741	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12548806	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12680211	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13254212	0.89[ASN][1000 genomes]
rs13255452	0.89[ASN][1000 genomes]
rs13262354	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13267237	0.81[ASN][1000 genomes]
rs13267989	0.88[ASN][1000 genomes]
rs13268594	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13279222	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13279263	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1476427	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1476428	0.90[ASN][1000 genomes]
rs16905041	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1858673	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1858674	0.88[ASN][1000 genomes]
rs2023624	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2023626	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2073640	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2105965	0.83[EUR][1000 genomes]
rs2105967	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2105968	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2157607	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2187981	0.90[ASN][1000 genomes]
rs2187982	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2213886	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2285231	0.84[EUR][1000 genomes]
rs2285232	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2285233	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34126139	0.87[ASN][1000 genomes]
rs35159732	0.81[EUR][1000 genomes]
rs35409073	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36046037	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4140679	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4140680	0.86[ASN][1000 genomes]
rs4495386	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4495387	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4734237	0.90[EUR][1000 genomes]
rs4734250	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4734266	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734268	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734269	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4735210	0.90[ASN][1000 genomes]
rs4735230	0.87[ASN][1000 genomes]
rs4735236	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4735256	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4735260	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4735268	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5005585	0.89[ASN][1000 genomes]
rs62526886	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6986001	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6986088	0.83[EUR][1000 genomes]
rs6986359	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6986689	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6988733	0.83[EUR][1000 genomes]
rs6989123	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6998150	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6999898	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7000724	0.82[EUR][1000 genomes]
rs7004287	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7006279	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7007102	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7007129	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008172	0.82[EUR][1000 genomes]
rs7008765	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7012741	0.82[EUR][1000 genomes]
rs7013893	0.87[ASN][1000 genomes]
rs7014073	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7014967	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7016220	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs715057	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7463641	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs756568	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs756569	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7812970	0.83[EUR][1000 genomes]
rs7817954	0.83[EUR][1000 genomes]
rs7819519	0.87[ASN][1000 genomes]
rs7823461	0.88[ASN][1000 genomes]
rs7826178	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7837109	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7837230	0.87[ASN][1000 genomes]
rs7840846	0.87[ASN][1000 genomes]
rs9297871	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9643298	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9643307	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9643308	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9693182	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9694450	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91606600-91627600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:91617000-91628600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:91617400-91628600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr8:91618200-91631600	Weak transcription	Stomach Mucosa	stomach
5	chr8:91619000-91628600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:91620000-91623800	Weak transcription	Pancreas	Pancrea
7	chr8:91620000-91627200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:91620000-91630000	Weak transcription	HSMMtube	muscle
9	chr8:91620400-91628400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr8:91620400-91628400	Weak transcription	Brain Hippocampus Middle	brain
11	chr8:91620400-91630800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:91620400-91652200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr8:91621000-91627200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr8:91621000-91628600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:91621000-91628800	Weak transcription	A549	lung
16	chr8:91621200-91628600	Weak transcription	Brain Anterior Caudate	brain
17	chr8:91621400-91627400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr8:91621600-91624000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr8:91621600-91624200	ZNF genes & repeats	GM12878-XiMat	blood
20	chr8:91621800-91623000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr8:91621800-91623200	Strong transcription	H9 Cell Line	embryonic stem cell
22	chr8:91621800-91623400	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr8:91621800-91624000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr8:91621800-91628400	Weak transcription	Adipose Nuclei	Adipose
25	chr8:91621800-91628600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr8:91621800-91628600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr8:91621800-91628600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr8:91622000-91624200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr8:91622000-91628400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr8:91622000-91628800	Weak transcription	Liver	Liver
31	chr8:91622400-91628000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr8:91622400-91628600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr8:91622400-91634600	Weak transcription	NHEK	skin
34	chr8:91622600-91624200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr8:91622800-91623000	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr8:91622800-91628200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr8:91622800-91628600	Weak transcription	Lung	lung
38	chr8:91622800-91628800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr8:91622800-91630800	Weak transcription	K562	blood

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