Variant report

Variant	rs13279222
Chromosome Location	chr8:91648728-91648729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91586071..91587664-chr8:91648510..91650915,2	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10112242	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10283086	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10808619	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10808620	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10956730	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10956736	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10956748	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10956749	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10956750	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11779312	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11784529	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12545279	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12545351	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12545726	0.83[EUR][1000 genomes]
rs12548741	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12680211	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13262354	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13268594	0.82[EUR][1000 genomes]
rs13279263	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1476427	0.85[EUR][1000 genomes]
rs16905041	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2023624	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2023626	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2073640	0.85[EUR][1000 genomes]
rs2105965	0.84[EUR][1000 genomes]
rs2105967	0.83[EUR][1000 genomes]
rs2105968	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2157607	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2187982	0.85[EUR][1000 genomes]
rs2213886	0.85[EUR][1000 genomes]
rs2285231	0.84[EUR][1000 genomes]
rs2285233	0.84[EUR][1000 genomes]
rs35159732	0.82[EUR][1000 genomes]
rs35409073	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36046037	0.82[EUR][1000 genomes]
rs4140679	0.82[ASN][1000 genomes]
rs4495386	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4495387	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4734237	0.81[EUR][1000 genomes]
rs4734250	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4734266	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4734268	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4734269	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4735256	0.84[EUR][1000 genomes]
rs4735260	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4735268	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62526886	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6986001	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6986088	0.84[EUR][1000 genomes]
rs6986359	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6986689	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6988733	0.83[EUR][1000 genomes]
rs6989123	0.85[EUR][1000 genomes]
rs6998150	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6999898	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7004287	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7006279	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7007102	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7007129	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7008765	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7014073	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7016220	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs715057	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7463641	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs756569	0.84[EUR][1000 genomes]
rs7812970	0.84[EUR][1000 genomes]
rs7817954	0.83[EUR][1000 genomes]
rs7826178	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7837109	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9643298	0.85[EUR][1000 genomes]
rs9643307	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9643308	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9693182	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9694450	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1827745	chr8:91623737-91660193	ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91620400-91652200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:91624000-91654800	Weak transcription	Pancreas	Pancrea
3	chr8:91624200-91652200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:91628200-91650400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:91628600-91652000	Weak transcription	HUVEC	blood vessel
6	chr8:91629200-91650200	Weak transcription	Esophagus	oesophagus
7	chr8:91629200-91653400	Weak transcription	Ovary	ovary
8	chr8:91629200-91654600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:91629600-91654400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr8:91630600-91649400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:91630600-91653600	Weak transcription	Fetal Intestine Small	intestine
12	chr8:91630600-91654200	Weak transcription	HSMMtube	muscle
13	chr8:91630600-91654400	Weak transcription	Fetal Muscle Leg	muscle
14	chr8:91630600-91655000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:91630600-91656800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:91630800-91652200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr8:91630800-91654400	Weak transcription	Fetal Intestine Large	intestine
18	chr8:91631000-91654800	Weak transcription	NH-A	brain
19	chr8:91631200-91654400	Weak transcription	Psoas Muscle	Psoas
20	chr8:91632000-91656800	Weak transcription	Left Ventricle	heart
21	chr8:91632400-91652200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:91632600-91650200	Weak transcription	Right Atrium	heart
23	chr8:91632800-91654600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr8:91633200-91652200	Weak transcription	NHLF	lung
25	chr8:91633800-91650400	Weak transcription	Adipose Nuclei	Adipose
26	chr8:91634200-91650400	Weak transcription	Fetal Lung	lung
27	chr8:91634800-91652200	Weak transcription	Hela-S3	cervix
28	chr8:91637600-91652200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr8:91638200-91654800	Weak transcription	Placenta	Placenta
30	chr8:91638800-91651600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr8:91639600-91650200	Weak transcription	HepG2	liver
32	chr8:91640400-91650200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr8:91640800-91649000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr8:91640800-91654600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr8:91641000-91648800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr8:91641000-91654600	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr8:91641200-91649000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr8:91641200-91650200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr8:91641400-91648800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr8:91641600-91649000	Weak transcription	Primary B cells from peripheral blood	blood
41	chr8:91641600-91649200	Weak transcription	Primary hematopoietic stem cells	blood
42	chr8:91641600-91650400	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr8:91641600-91652200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr8:91641600-91654800	Weak transcription	Primary T cells from cord blood	blood
45	chr8:91641800-91648800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr8:91642400-91649000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr8:91642600-91649000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr8:91642800-91649200	Weak transcription	Primary B cells from cord blood	blood
49	chr8:91643200-91648800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr8:91643200-91655400	Weak transcription	Brain Germinal Matrix	brain

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