Variant report

Variant	rs7006279
Chromosome Location	chr8:91605364-91605365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91594458..91596595-chr8:91604272..91606928,3	MCF-7	breast:
2	chr8:91604199..91608831-chr8:91656344..91658872,6	MCF-7	breast:
3	chr8:91596652..91598332-chr8:91603771..91606248,2	K562	blood:
4	chr8:91601757..91606982-chr8:91655744..91659246,4	MCF-7	breast:
5	chr8:91595036..91598332-chr8:91602529..91606248,4	K562	blood:

Variant related genes	Relation type
ENSG00000246792	Chromatin interaction
ENSG00000180694	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10086401	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10086462	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10091275	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10103198	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10105142	0.85[EUR][1000 genomes]
rs10112242	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10283086	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10808619	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10808620	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10956720	0.89[ASN][1000 genomes]
rs10956730	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10956736	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10956748	0.93[ASN][1000 genomes]
rs10956749	0.93[ASN][1000 genomes]
rs10956750	0.93[ASN][1000 genomes]
rs11776824	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11779312	0.87[ASN][1000 genomes]
rs11784529	0.92[ASN][1000 genomes]
rs12545279	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12545351	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12547016	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12548741	0.93[ASN][1000 genomes]
rs12548806	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12680211	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13254212	0.90[ASN][1000 genomes]
rs13255452	0.90[ASN][1000 genomes]
rs13262354	0.91[ASN][1000 genomes]
rs13267237	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13267989	0.90[ASN][1000 genomes]
rs13268594	0.91[ASN][1000 genomes]
rs13279222	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13279263	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1476427	0.92[ASN][1000 genomes]
rs1476428	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16905041	0.89[ASN][1000 genomes]
rs1858673	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1858674	0.90[ASN][1000 genomes]
rs2023624	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2023626	0.93[ASN][1000 genomes]
rs2073640	0.92[ASN][1000 genomes]
rs2105967	0.92[ASN][1000 genomes]
rs2105968	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2157607	0.93[ASN][1000 genomes]
rs2187981	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2187982	0.92[ASN][1000 genomes]
rs2213886	0.92[ASN][1000 genomes]
rs2285232	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2285233	0.91[ASN][1000 genomes]
rs34126139	0.88[ASN][1000 genomes]
rs35409073	0.90[ASN][1000 genomes]
rs36046037	0.91[ASN][1000 genomes]
rs4140679	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4140680	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4495386	0.93[ASN][1000 genomes]
rs4495387	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4734237	0.84[EUR][1000 genomes]
rs4734250	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734266	0.93[ASN][1000 genomes]
rs4734268	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734269	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4735210	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4735230	0.88[ASN][1000 genomes]
rs4735236	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4735256	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4735260	0.93[ASN][1000 genomes]
rs4735268	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs5005585	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62526886	0.93[ASN][1000 genomes]
rs6471113	0.83[EUR][1000 genomes]
rs6986001	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6986359	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6986689	0.93[ASN][1000 genomes]
rs6989123	0.92[ASN][1000 genomes]
rs6998150	0.90[ASN][1000 genomes]
rs6999898	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7004287	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7007102	0.93[ASN][1000 genomes]
rs7007129	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7008172	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7008765	0.93[ASN][1000 genomes]
rs7012741	0.90[EUR][1000 genomes]
rs7013893	0.88[ASN][1000 genomes]
rs7014073	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7014967	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7016220	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs715057	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7463641	0.91[ASN][1000 genomes]
rs756568	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs756569	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7819519	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7823461	0.90[ASN][1000 genomes]
rs7826178	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7837109	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7837230	0.88[ASN][1000 genomes]
rs7840846	0.88[ASN][1000 genomes]
rs9297871	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9643298	0.92[ASN][1000 genomes]
rs9643307	0.93[ASN][1000 genomes]
rs9643308	0.93[ASN][1000 genomes]
rs9693182	0.93[ASN][1000 genomes]
rs9694450	0.93[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91594600-91621600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:91597600-91606400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:91597800-91605800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:91603200-91605400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:91603200-91605600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr8:91605200-91605600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:91605200-91605800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr8:91605200-91605800	Enhancers	HSMM	muscle
9	chr8:91605200-91606600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links