Variant report

Variant	rs9643298
Chromosome Location	chr8:91552502-91552503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91551402..91553580-chr8:91557141..91559345,2	MCF-7	breast:
2	chr8:91015944..91018143-chr8:91550446..91553140,2	K562	blood:
3	chr8:91532164..91534929-chr8:91551181..91553248,2	MCF-7	breast:
4	chr8:91551822..91554468-chr8:91559109..91561849,2	K562	blood:

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs10086401	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10086462	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10091275	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10103198	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10105142	0.91[EUR][1000 genomes]
rs10111060	0.86[TSI][hapmap]
rs10112242	0.83[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10283086	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10504894	0.92[EUR][1000 genomes]
rs10808619	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10808620	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10956720	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10956730	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10956736	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10956748	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10956749	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10956750	0.91[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11776824	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779312	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11784529	0.91[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12545279	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12545351	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12545726	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12547016	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12548741	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12548806	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12674903	0.82[EUR][1000 genomes]
rs12678527	0.92[EUR][1000 genomes]
rs12680211	0.87[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13254212	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13255452	0.91[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13262354	0.91[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13267237	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13267989	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13268594	0.87[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13268721	0.83[EUR][1000 genomes]
rs13277387	0.91[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs13279222	0.85[EUR][1000 genomes]
rs13279263	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1476427	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476428	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16905041	0.95[CHB][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1858673	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1858674	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2023624	0.87[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2023626	0.91[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2073640	0.91[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2105965	0.91[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2105967	0.90[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2105968	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2157607	0.87[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2187981	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2187982	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2187983	0.84[TSI][hapmap]
rs2205151	0.83[GIH][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs2205152	0.83[GIH][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs2213886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2285231	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2285232	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2285233	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34126139	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35159732	0.83[EUR][1000 genomes]
rs35361206	0.84[EUR][1000 genomes]
rs35409073	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35816262	0.85[EUR][1000 genomes]
rs36046037	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3950221	0.83[EUR][1000 genomes]
rs4140679	0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4140680	0.81[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4495386	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4495387	0.91[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4734237	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4734250	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734266	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4734268	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4734269	0.91[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4735190	0.85[EUR][1000 genomes]
rs4735201	0.83[GIH][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes]
rs4735210	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735230	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4735236	0.80[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4735256	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4735260	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4735268	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5005585	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56784954	0.84[EUR][1000 genomes]
rs62526886	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6471113	0.81[EUR][1000 genomes]
rs6986001	0.87[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6986088	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6986165	0.81[TSI][hapmap]
rs6986359	0.83[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6986689	0.91[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6988733	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6989123	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6993715	0.92[EUR][1000 genomes]
rs6998150	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6999898	0.87[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7000724	0.88[EUR][1000 genomes]
rs7002775	0.83[TSI][hapmap]
rs7004287	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7006279	0.92[ASN][1000 genomes]
rs7007102	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7007129	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7008172	0.83[EUR][1000 genomes]
rs7008765	0.87[CEU][hapmap];0.85[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7012741	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7013893	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7014073	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7014967	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7016220	0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7017295	0.88[TSI][hapmap]
rs715057	0.83[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7463641	0.95[CHB][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs756568	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs756569	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7812970	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7817954	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7819519	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7823461	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7824376	0.92[EUR][1000 genomes]
rs7824511	0.92[EUR][1000 genomes]
rs7826178	0.87[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7837109	0.83[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7837230	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7840846	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9297871	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9642910	0.83[TSI][hapmap]
rs9643307	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9643308	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9693182	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9694450	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91546800-91552800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:91547000-91552600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:91547000-91557400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:91549400-91553000	Weak transcription	HSMMtube	muscle
5	chr8:91549400-91553000	Weak transcription	NHDF-Ad	bronchial
6	chr8:91549400-91554800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:91549400-91554800	Weak transcription	NHLF	lung
8	chr8:91549600-91552800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:91549600-91552800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr8:91549600-91552800	Weak transcription	Osteobl	bone
11	chr8:91549600-91553000	Weak transcription	NH-A	brain
12	chr8:91549600-91553600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:91549600-91553600	Weak transcription	Hela-S3	cervix
14	chr8:91549800-91553000	Weak transcription	HUVEC	blood vessel
15	chr8:91550000-91552600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr8:91550000-91552800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr8:91550000-91553000	Weak transcription	HMEC	breast
18	chr8:91550000-91553600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr8:91551200-91553000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr8:91551200-91555600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:91551400-91554800	Weak transcription	Fetal Stomach	stomach
22	chr8:91552000-91554000	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr8:91552400-91554400	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr8:91552400-91555600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr8:91552400-91555600	Enhancers	HSMM	muscle

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