Variant report

Variant	rs2205152
Chromosome Location	chr8:91483618-91483619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91471834..91475082-chr8:91482886..91485464,3	MCF-7	breast:
2	chr8:91466176..91468080-chr8:91482550..91484449,2	K562	blood:
3	chr8:91011783..91015230-chr8:91481939..91486676,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104325	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10086488	0.84[EUR][1000 genomes]
rs10094978	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10111060	0.80[CEU][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1015994	0.84[EUR][1000 genomes]
rs1028255	0.96[CEU][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1033347	0.83[EUR][1000 genomes]
rs1033348	0.83[EUR][1000 genomes]
rs10504894	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10956750	0.87[CEU][hapmap]
rs11784529	0.87[CEU][hapmap]
rs12545726	0.84[EUR][1000 genomes]
rs12674903	0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12678527	0.95[CEU][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes]
rs12679836	0.84[EUR][1000 genomes]
rs12680211	0.83[CEU][hapmap];0.84[TSI][hapmap]
rs13255452	0.86[CEU][hapmap]
rs13262354	0.87[CEU][hapmap];0.84[TSI][hapmap]
rs13268594	0.83[CEU][hapmap]
rs13268721	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13277387	0.87[CEU][hapmap]
rs1476427	0.83[EUR][1000 genomes]
rs1858674	0.87[CEU][hapmap]
rs2023624	0.83[CEU][hapmap]
rs2023626	0.87[CEU][hapmap]
rs2073640	0.87[CEU][hapmap];0.81[TSI][hapmap]
rs2105965	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs2105967	0.90[CEU][hapmap]
rs2142146	0.83[EUR][1000 genomes]
rs2142147	0.85[EUR][1000 genomes]
rs2157607	0.83[CEU][hapmap]
rs2187982	0.83[EUR][1000 genomes]
rs2205150	0.80[CEU][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2205151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2213886	0.83[EUR][1000 genomes]
rs2223010	0.96[CEU][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2285231	0.84[EUR][1000 genomes]
rs2879361	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35361206	0.84[EUR][1000 genomes]
rs35816262	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3950221	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4495387	0.91[CEU][hapmap]
rs4734269	0.87[CEU][hapmap]
rs4735190	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4735201	0.95[CEU][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs56784954	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6471084	0.81[EUR][1000 genomes]
rs6471085	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6471105	0.82[EUR][1000 genomes]
rs6471113	0.87[JPT][hapmap];0.80[EUR][1000 genomes]
rs6982329	0.84[EUR][1000 genomes]
rs6986001	0.83[CEU][hapmap]
rs6986088	0.85[EUR][1000 genomes]
rs6986165	0.80[CEU][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs6986359	0.82[TSI][hapmap]
rs6986689	0.87[CEU][hapmap]
rs6988302	0.96[CEU][hapmap];0.91[JPT][hapmap];0.95[EUR][1000 genomes]
rs6988733	0.84[EUR][1000 genomes]
rs6989123	0.83[EUR][1000 genomes]
rs6992512	0.87[EUR][1000 genomes]
rs6993715	0.89[EUR][1000 genomes]
rs6995399	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6998106	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6999898	0.83[CEU][hapmap]
rs7000724	0.86[EUR][1000 genomes]
rs7002775	0.96[CEU][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs7008765	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs7017295	0.96[CEU][hapmap];0.81[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7017630	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7812970	0.85[EUR][1000 genomes]
rs7817954	0.84[EUR][1000 genomes]
rs7821069	0.83[EUR][1000 genomes]
rs7823461	0.87[CEU][hapmap]
rs7824376	0.95[CEU][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes]
rs7824511	0.95[CEU][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes]
rs7824956	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7826178	0.83[CEU][hapmap]
rs9297857	0.96[CEU][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9642910	0.96[CEU][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs9643295	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9643298	0.83[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91480400-91483800	Weak transcription	Osteobl	bone
2	chr8:91480600-91484000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:91480600-91484800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:91480600-91491200	Weak transcription	Liver	Liver
5	chr8:91482800-91484800	Weak transcription	K562	blood
6	chr8:91483400-91484600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:91483400-91484800	Enhancers	Hela-S3	cervix
8	chr8:91483600-91484400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:91483600-91484400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:91483600-91484800	Enhancers	HSMM	muscle
11	chr8:91483600-91484800	Enhancers	NH-A	brain
12	chr8:91483600-91485000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:91483600-91485000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr8:91483600-91485000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr8:91483600-91485200	Enhancers	HMEC	breast
16	chr8:91483600-91485600	Enhancers	NHDF-Ad	bronchial
17	chr8:91483600-91485800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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