Variant report

Variant	rs7002775
Chromosome Location	chr8:91476765-91476766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr8:91476589-91476963	MCF10A-Er-Src	breast:	n/a	chr8:91476761-91476772 chr8:91476765-91476773 chr8:91476763-91476775
2	MYC	chr8:91476612-91476961	MCF10A-Er-Src	breast:	n/a	chr8:91476717-91476726
3	FOS	chr8:91476581-91476965	MCF10A-Er-Src	breast:	n/a	chr8:91476761-91476772 chr8:91476765-91476773 chr8:91476763-91476775
4	STAT3	chr8:91476694-91476953	MCF10A-Er-Src	breast:	n/a	n/a
5	POLR2A	chr8:91476637-91476784	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr8:91476506-91477047	MCF10A-Er-Src	breast:	n/a	chr8:91476761-91476772 chr8:91476765-91476773 chr8:91476763-91476775
7	MYC	chr8:91476639-91477047	MCF10A-Er-Src	breast:	n/a	chr8:91476717-91476726
8	STAT3	chr8:91476551-91476866	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr8:91476592-91476965	MCF10A-Er-Src	breast:	n/a	chr8:91476761-91476772 chr8:91476765-91476773 chr8:91476763-91476775
10	STAT3	chr8:91476694-91477025	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91012967..91015900-chr8:91475640..91477223,2	K562	blood:

Variant related genes	Relation type
ENSG00000265157	TF binding region
ENSG00000104320	Chromatin interaction
ENSG00000104325	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10086488	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10094978	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10111060	0.84[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.85[MKK][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1015994	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1028255	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1033347	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1033348	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10504894	0.92[CEU][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs12674903	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12678527	0.92[CEU][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs12679836	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13268721	0.92[EUR][1000 genomes]
rs2105967	0.82[CEU][hapmap]
rs2142146	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2142147	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2205150	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2205151	0.96[CEU][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs2205152	0.96[CEU][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs2223010	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2879361	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35816262	0.90[EUR][1000 genomes]
rs3950221	0.96[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4495387	0.83[CEU][hapmap]
rs4735190	0.91[EUR][1000 genomes]
rs4735201	0.92[CEU][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs56784954	0.91[EUR][1000 genomes]
rs6471084	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6471085	0.87[EUR][1000 genomes]
rs6471105	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6471113	0.80[CEU][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes]
rs6982329	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6986165	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6992512	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6993715	0.83[EUR][1000 genomes]
rs6995399	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6998106	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7000724	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7017295	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7017630	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7821069	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7824376	0.92[CEU][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs7824511	0.92[CEU][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs7824956	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9297857	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9642910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9643295	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]

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Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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