Variant report

Variant	rs6998106
Chromosome Location	chr8:91479755-91479756
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr8:91479737-91480316	HCT-116	colon:	n/a	chr8:91480059-91480070
2	EP300	chr8:91479184-91480341	GM12878	blood:	n/a	chr8:91480074-91480087 chr8:91479422-91479436
3	STAT3	chr8:91479706-91480578	MCF10A-Er-Src	breast:	n/a	chr8:91480489-91480496 chr8:91480061-91480069
4	POU2F2	chr8:91479737-91480341	GM12891	blood:	n/a	n/a
5	FOS	chr8:91479162-91480573	MCF10A-Er-Src	breast:	n/a	chr8:91479884-91479891 chr8:91479883-91479891
6	RCOR1	chr8:91479726-91480551	Hela-S3	cervix:	n/a	n/a
7	CEBPB	chr8:91479527-91480374	A549	lung:	n/a	chr8:91480059-91480070
8	JUND	chr8:91479211-91480543	Hela-S3	cervix:	n/a	chr8:91479884-91479891 chr8:91479883-91479891
9	MAX	chr8:91479738-91480571	A549	lung:	n/a	n/a
10	POLR2A	chr8:91479709-91480507	Hela-S3	cervix:	n/a	n/a
11	RFX5	chr8:91479012-91480624	Hela-S3	cervix:	n/a	n/a
12	FOSL2	chr8:91479686-91480389	A549	lung:	n/a	chr8:91479884-91479891 chr8:91479883-91479891
13	SPI1	chr8:91479695-91480456	GM12878	blood:	n/a	chr8:91480075-91480084 chr8:91480236-91480249
14	MYC	chr8:91479522-91480521	MCF10A-Er-Src	breast:	n/a	n/a
15	MYC	chr8:91479186-91480605	MCF10A-Er-Src	breast:	n/a	n/a
16	TCF7L2	chr8:91479608-91480571	Hela-S3	cervix:	n/a	n/a
17	CHD2	chr8:91479734-91480529	Hela-S3	cervix:	n/a	n/a
18	BATF	chr8:91479747-91480106	GM12878	blood:	n/a	n/a
19	RUNX3	chr8:91479638-91480346	GM12878	blood:	n/a	n/a
20	CEBPB	chr8:91479528-91480218	HepG2	liver:	n/a	chr8:91480059-91480070
21	GATA3	chr8:91479725-91480571	A549	lung:	n/a	chr8:91480555-91480562 chr8:91480555-91480562 chr8:91480548-91480569 chr8:91480077-91480087 chr8:91480551-91480567 chr8:91480554-91480564 chr8:91480555-91480562
22	SP1	chr8:91479715-91480597	A549	lung:	n/a	n/a
23	STAT3	chr8:91479199-91480500	MCF10A-Er-Src	breast:	n/a	chr8:91480489-91480496 chr8:91480061-91480069
24	FOS	chr8:91479192-91480513	MCF10A-Er-Src	breast:	n/a	chr8:91479884-91479891 chr8:91479883-91479891
25	POLR2A	chr8:91479723-91480562	Hela-S3	cervix:	n/a	n/a
26	EP300	chr8:91478924-91480618	Hela-S3	cervix:	n/a	chr8:91480074-91480087 chr8:91480426-91480440 chr8:91479422-91479436 chr8:91480472-91480482 chr8:91480420-91480434
27	TBP	chr8:91479755-91480214	GM12878	blood:	n/a	n/a
28	EP300	chr8:91479194-91480417	GM12878	blood:	n/a	chr8:91480074-91480087 chr8:91479422-91479436
29	JUN	chr8:91479252-91480562	Hela-S3	cervix:	n/a	chr8:91479884-91479891 chr8:91479883-91479891
30	POLR2A	chr8:91479234-91480599	MCF10A-Er-Src	breast:	n/a	n/a
31	RAD21	chr8:91479204-91480585	Hela-S3	cervix:	n/a	n/a
32	FOS	chr8:91479195-91480505	MCF10A-Er-Src	breast:	n/a	chr8:91479884-91479891 chr8:91479883-91479891
33	CEBPB	chr8:91479126-91480601	Hela-S3	cervix:	n/a	chr8:91480059-91480070
34	STAT3	chr8:91479195-91480559	Hela-S3	cervix:	n/a	chr8:91480489-91480496 chr8:91480061-91480069
35	MAX	chr8:91479442-91480519	Hela-S3	cervix:	n/a	n/a
36	NFIC	chr8:91479630-91480305	GM12878	blood:	n/a	n/a
37	TBP	chr8:91479175-91480572	Hela-S3	cervix:	n/a	n/a
38	E2F4	chr8:91479399-91480479	MCF10A-Er-Src	breast:	n/a	chr8:91480040-91480049 chr8:91479484-91479493 chr8:91479520-91479529
39	POLR2A	chr8:91479152-91481028	MCF10A-Er-Src	breast:	n/a	n/a
40	STAT3	chr8:91479160-91480572	MCF10A-Er-Src	breast:	n/a	chr8:91480489-91480496 chr8:91480061-91480069
41	CEBPB	chr8:91479577-91480558	A549	lung:	n/a	chr8:91480059-91480070
42	BRCA1	chr8:91479141-91480576	Hela-S3	cervix:	n/a	n/a
43	USF2	chr8:91479708-91480456	Hela-S3	cervix:	n/a	n/a
44	SMC3	chr8:91479229-91480547	Hela-S3	cervix:	n/a	n/a
45	FOS	chr8:91479129-91480521	MCF10A-Er-Src	breast:	n/a	chr8:91479884-91479891 chr8:91479883-91479891

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91474025..91477020-chr8:91479410..91481404,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265157	TF binding region
ENSG00000265157	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10086401	0.82[EUR][1000 genomes]
rs10086462	0.82[EUR][1000 genomes]
rs10086488	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10091275	0.82[EUR][1000 genomes]
rs10094978	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10105142	0.82[EUR][1000 genomes]
rs10111060	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1015994	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1028255	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1033347	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1033348	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10504894	0.81[EUR][1000 genomes]
rs11776824	0.81[EUR][1000 genomes]
rs12547016	0.82[EUR][1000 genomes]
rs12548806	0.82[EUR][1000 genomes]
rs12674903	0.85[EUR][1000 genomes]
rs12678527	0.81[EUR][1000 genomes]
rs12679836	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13268721	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1476428	0.81[EUR][1000 genomes]
rs1858673	0.82[EUR][1000 genomes]
rs2142146	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2142147	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2187981	0.81[EUR][1000 genomes]
rs2205150	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2205151	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2205152	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2223010	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2285232	0.82[EUR][1000 genomes]
rs2879361	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35816262	0.86[EUR][1000 genomes]
rs3950221	0.88[EUR][1000 genomes]
rs4735190	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4735210	0.81[EUR][1000 genomes]
rs56784954	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6471082	0.85[EUR][1000 genomes]
rs6471083	0.85[EUR][1000 genomes]
rs6471084	0.92[EUR][1000 genomes]
rs6471085	0.83[EUR][1000 genomes]
rs6471105	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6471113	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6982329	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6986165	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6988302	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6992512	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6993715	0.80[EUR][1000 genomes]
rs6995399	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7000724	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7002775	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7012741	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7014967	0.82[EUR][1000 genomes]
rs7017295	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7017630	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs756568	0.82[EUR][1000 genomes]
rs7821069	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7824376	0.81[EUR][1000 genomes]
rs7824511	0.81[EUR][1000 genomes]
rs7824956	0.93[EUR][1000 genomes]
rs9297857	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9297871	0.82[EUR][1000 genomes]
rs9642910	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9643295	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91476800-91480600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr8:91479000-91481000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:91479200-91480000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:91479200-91480600	Enhancers	Liver	Liver
5	chr8:91479400-91479800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr8:91479400-91480000	Flanking Active TSS	Hela-S3	cervix
7	chr8:91479400-91480400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:91479400-91480400	Enhancers	GM12878-XiMat	blood
9	chr8:91479400-91480600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:91479400-91480600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr8:91479400-91480600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr8:91479400-91480600	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr8:91479400-91481000	Enhancers	HMEC	breast
14	chr8:91479600-91480400	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr8:91479600-91480400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr8:91479600-91480400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr8:91479600-91480400	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr8:91479600-91480400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr8:91479600-91480400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr8:91479600-91480400	Flanking Active TSS	A549	lung
21	chr8:91479600-91480400	Enhancers	Dnd41	blood
22	chr8:91479600-91480400	Enhancers	NHLF	lung
23	chr8:91479600-91480600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr8:91479600-91480600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr8:91479600-91480600	Enhancers	NHDF-Ad	bronchial
26	chr8:91479600-91481200	Enhancers	HSMM	muscle

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