Variant report

Variant	rs7012741
Chromosome Location	chr8:91536065-91536066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91530400..91534566-chr8:91534971..91538885,4	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10086401	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10086462	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10086488	0.83[EUR][1000 genomes]
rs10091275	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10094978	0.82[EUR][1000 genomes]
rs10103198	0.83[EUR][1000 genomes]
rs10105142	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10111060	1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10112242	0.90[CHB][hapmap];0.82[EUR][1000 genomes]
rs10283086	0.82[EUR][1000 genomes]
rs10808619	0.82[EUR][1000 genomes]
rs10808620	0.82[EUR][1000 genomes]
rs10956730	0.95[CHB][hapmap];0.84[YRI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10956736	0.91[EUR][1000 genomes]
rs11776824	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12545351	0.83[EUR][1000 genomes]
rs12545726	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12547016	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12548806	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13255452	0.81[JPT][hapmap]
rs13267237	0.84[EUR][1000 genomes]
rs13268594	0.80[CHB][hapmap]
rs1476427	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1476428	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16905041	0.85[CHB][hapmap]
rs1858673	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1858674	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs2023624	0.90[CHB][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes]
rs2073640	0.80[CHB][hapmap]
rs2105965	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2105967	0.82[CHB][hapmap]
rs2105968	0.95[CHB][hapmap];0.84[YRI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2157607	0.81[CHB][hapmap]
rs2187981	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2187982	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2205150	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2213886	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2285231	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2285232	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4140679	0.85[CHB][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4734237	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734250	0.95[CHB][hapmap];0.83[YRI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4734268	0.82[EUR][1000 genomes]
rs4735210	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4735236	0.90[CHB][hapmap];0.83[YRI][hapmap];0.94[EUR][1000 genomes]
rs5005585	0.83[EUR][1000 genomes]
rs6471113	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6986001	0.85[CHB][hapmap]
rs6986088	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6986359	0.90[CHB][hapmap];0.82[EUR][1000 genomes]
rs6988733	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6989123	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6992512	0.81[EUR][1000 genomes]
rs6998106	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6999898	0.85[CHB][hapmap]
rs7000724	0.82[EUR][1000 genomes]
rs7004287	0.82[EUR][1000 genomes]
rs7006279	0.90[EUR][1000 genomes]
rs7007129	0.82[EUR][1000 genomes]
rs7008172	0.93[EUR][1000 genomes]
rs7014073	0.83[EUR][1000 genomes]
rs7014967	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7016220	0.90[CHB][hapmap];0.84[YRI][hapmap];0.90[EUR][1000 genomes]
rs715057	0.90[CHB][hapmap];0.82[EUR][1000 genomes]
rs7463641	0.85[CHB][hapmap]
rs756568	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7812970	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7817954	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7819519	0.83[EUR][1000 genomes]
rs7823461	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs7826178	0.84[CHB][hapmap]
rs7837109	0.90[CHB][hapmap];0.83[EUR][1000 genomes]
rs9297871	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9643295	0.82[EUR][1000 genomes]
rs9643298	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981885	chr8:91528144-91537088	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91533800-91542200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:91533800-91545800	Weak transcription	HSMMtube	muscle

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