Variant report

Variant	rs4734237
Chromosome Location	chr8:91533361-91533362
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91530400..91534566-chr8:91534971..91538885,4	MCF-7	breast:
2	chr8:91532246..91535757-chr8:91536085..91540118,3	MCF-7	breast:
3	chr8:91532164..91534929-chr8:91551181..91553248,2	MCF-7	breast:
4	chr8:91532071..91534513-chr8:91543640..91546018,2	MCF-7	breast:
5	chr8:91526432..91528878-chr8:91531076..91533715,2	K562	blood:

Extended variants
information (count: 101 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10086401	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10086462	0.90[EUR][1000 genomes]
rs10091275	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10105142	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10111060	0.81[TSI][hapmap]
rs10112242	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[EUR][1000 genomes]
rs1028255	0.81[EUR][1000 genomes]
rs10283086	0.90[EUR][1000 genomes]
rs10504894	0.85[EUR][1000 genomes]
rs10808619	0.90[EUR][1000 genomes]
rs10808620	0.90[EUR][1000 genomes]
rs10956720	0.84[EUR][1000 genomes]
rs10956730	0.84[CEU][hapmap];0.91[CHB][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10956736	0.85[EUR][1000 genomes]
rs10956750	0.92[CEU][hapmap]
rs11776824	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11784529	0.92[CEU][hapmap]
rs12545351	0.91[EUR][1000 genomes]
rs12545726	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12547016	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12548806	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12678527	0.86[EUR][1000 genomes]
rs12680211	0.87[CEU][hapmap];0.81[GIH][hapmap]
rs13254212	0.84[EUR][1000 genomes]
rs13255452	0.91[CEU][hapmap];0.80[JPT][hapmap];0.84[EUR][1000 genomes]
rs13262354	0.92[CEU][hapmap];0.81[GIH][hapmap]
rs13267989	0.84[EUR][1000 genomes]
rs13268594	0.87[CEU][hapmap]
rs13277387	0.92[CEU][hapmap];0.81[GIH][hapmap]
rs13279222	0.81[EUR][1000 genomes]
rs1476427	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1476428	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16905041	0.87[CEU][hapmap];0.80[CHB][hapmap]
rs1858673	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1858674	0.92[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs2023624	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[EUR][1000 genomes]
rs2023626	0.92[CEU][hapmap];0.81[GIH][hapmap]
rs2073640	0.92[CEU][hapmap];0.83[GIH][hapmap]
rs2105965	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2105967	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs2105968	0.84[CEU][hapmap];0.91[CHB][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2157607	0.87[CEU][hapmap]
rs2187981	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2187982	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2187983	0.80[TSI][hapmap]
rs2213886	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2223010	0.80[EUR][1000 genomes]
rs2285231	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2285232	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2879361	0.81[EUR][1000 genomes]
rs34126139	0.84[EUR][1000 genomes]
rs4140679	0.84[CEU][hapmap];0.82[CHB][hapmap];0.80[GIH][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4495387	0.91[CEU][hapmap]
rs4734250	0.84[CEU][hapmap];0.91[CHB][hapmap];0.81[GIH][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4734268	0.90[EUR][1000 genomes]
rs4734269	0.92[CEU][hapmap]
rs4735201	0.87[MEX][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs4735210	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4735230	0.84[EUR][1000 genomes]
rs4735236	0.88[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes]
rs6471113	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6986001	0.96[CEU][hapmap];0.81[CHB][hapmap];0.83[EUR][1000 genomes]
rs6986088	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6986359	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[GIH][hapmap];0.84[TSI][hapmap];0.90[EUR][1000 genomes]
rs6986689	0.92[CEU][hapmap]
rs6988302	0.81[EUR][1000 genomes]
rs6988733	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6989123	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6993715	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6995399	0.81[EUR][1000 genomes]
rs6999898	0.96[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs7000724	0.90[EUR][1000 genomes]
rs7002775	0.83[GIH][hapmap]
rs7004287	0.90[EUR][1000 genomes]
rs7006279	0.84[EUR][1000 genomes]
rs7007129	0.90[EUR][1000 genomes]
rs7008172	0.87[EUR][1000 genomes]
rs7008765	0.87[CEU][hapmap];0.81[GIH][hapmap]
rs7012741	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7013893	0.84[EUR][1000 genomes]
rs7014073	0.90[EUR][1000 genomes]
rs7014967	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7016220	0.81[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs7017295	0.83[GIH][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs7017630	0.81[EUR][1000 genomes]
rs715057	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[EUR][1000 genomes]
rs7463641	0.83[CEU][hapmap];0.81[CHB][hapmap]
rs756568	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7812970	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7817954	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7823461	0.92[CEU][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs7824376	0.86[EUR][1000 genomes]
rs7824511	0.86[EUR][1000 genomes]
rs7826178	0.96[CEU][hapmap];0.81[CHB][hapmap];0.83[EUR][1000 genomes]
rs7837109	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[EUR][1000 genomes]
rs7837230	0.84[EUR][1000 genomes]
rs7840846	0.84[EUR][1000 genomes]
rs9297871	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9642910	0.83[GIH][hapmap]
rs9643298	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981885	chr8:91528144-91537088	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4734237	TMEM64	cis	Liver	GTEx
rs4734237	TMEM64	cis	multi-tissue	Pritchard

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91531400-91533600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:91531800-91533800	Enhancers	HSMM	muscle
3	chr8:91532000-91533800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:91532000-91533800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr8:91532000-91533800	Enhancers	NHDF-Ad	bronchial
6	chr8:91532400-91533600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:91532400-91533600	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr8:91532600-91533600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:91532600-91533800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr8:91532600-91533800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:91532600-91533800	Enhancers	HMEC	breast
12	chr8:91532800-91533400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr8:91532800-91533800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:91532800-91533800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:91532800-91533800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr8:91532800-91533800	Enhancers	NHEK	skin
17	chr8:91532800-91534600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr8:91533000-91533400	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr8:91533000-91533600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr8:91533000-91533800	Flanking Active TSS	HSMMtube	muscle
21	chr8:91533200-91533400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:91533200-91533800	Enhancers	NH-A	brain
23	chr8:91533200-91533800	Enhancers	Osteobl	bone

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