Variant report

Variant	rs11784529
Chromosome Location	chr8:91640956-91640957
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91608309..91610811-chr8:91640796..91643041,2	MCF-7	breast:
2	chr8:91590970..91593547-chr8:91640454..91643139,2	MCF-7	breast:
3	chr8:91637038..91640494-chr8:91640523..91644526,4	MCF-7	breast:
4	chr8:91637648..91642944-chr8:91643951..91646932,7	MCF-7	breast:
5	chr8:91634882..91636452-chr8:91639541..91641739,2	MCF-7	breast:
6	chr8:91232304..91234440-chr8:91638793..91641094,2	K562	blood:

Variant related genes	Relation type
ENSG00000253394	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10086401	0.86[ASN][1000 genomes]
rs10086462	0.81[ASN][1000 genomes]
rs10091275	0.86[ASN][1000 genomes]
rs10103198	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10112242	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10283086	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10504894	0.84[CEU][hapmap]
rs10808619	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10808620	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10956720	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10956730	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10956736	0.90[ASN][1000 genomes]
rs10956748	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10956749	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10956750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11776824	0.87[ASN][1000 genomes]
rs11779312	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12545279	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12545351	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12545726	0.83[EUR][1000 genomes]
rs12547016	0.86[ASN][1000 genomes]
rs12548741	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12548806	0.86[ASN][1000 genomes]
rs12678527	0.84[CEU][hapmap]
rs12680211	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13254212	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13255452	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13262354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13266461	0.84[CEU][hapmap]
rs13267989	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13268594	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13277387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13279222	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13279263	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1476427	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1476428	0.87[ASN][1000 genomes]
rs16905041	0.85[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.87[ASN][1000 genomes]
rs1858673	0.86[ASN][1000 genomes]
rs1858674	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2023624	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2023626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2073640	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2105965	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs2105967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2105968	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2157607	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2187981	0.87[ASN][1000 genomes]
rs2187982	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2205151	0.83[CEU][hapmap]
rs2205152	0.87[CEU][hapmap]
rs2213886	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2285231	0.85[EUR][1000 genomes]
rs2285232	0.86[ASN][1000 genomes]
rs2285233	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34126139	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35159732	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35409073	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36046037	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3950221	0.81[CEU][hapmap]
rs4140679	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4140680	0.81[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4495386	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4495387	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734250	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4734266	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734268	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4735201	0.87[CEU][hapmap]
rs4735210	0.87[ASN][1000 genomes]
rs4735230	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4735236	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs4735256	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4735260	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4735268	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4735295	0.84[CEU][hapmap]
rs5005585	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62526886	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6986001	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6986088	0.84[EUR][1000 genomes]
rs6986359	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6986689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6988733	0.83[EUR][1000 genomes]
rs6989123	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6998150	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6999898	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7004287	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7006279	0.92[ASN][1000 genomes]
rs7007102	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7007129	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7008765	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7013893	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7014073	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7014967	0.86[ASN][1000 genomes]
rs7016220	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs715057	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7463641	0.81[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs756568	0.86[ASN][1000 genomes]
rs756569	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7812970	0.84[EUR][1000 genomes]
rs7817954	0.83[EUR][1000 genomes]
rs7819519	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7823461	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7824376	0.84[CEU][hapmap]
rs7824511	0.84[CEU][hapmap]
rs7826178	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7837109	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7837230	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7840846	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9297871	0.86[ASN][1000 genomes]
rs9643298	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9643307	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9643308	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9693182	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9694450	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1827745	chr8:91623737-91660193	ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91620400-91652200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:91624000-91654800	Weak transcription	Pancreas	Pancrea
3	chr8:91624200-91652200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:91624400-91644800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr8:91628200-91650400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr8:91628600-91652000	Weak transcription	HUVEC	blood vessel
7	chr8:91629200-91650200	Weak transcription	Esophagus	oesophagus
8	chr8:91629200-91653400	Weak transcription	Ovary	ovary
9	chr8:91629200-91654600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:91629400-91645200	Weak transcription	NHDF-Ad	bronchial
11	chr8:91629600-91654400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:91630200-91642200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:91630600-91642200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:91630600-91649400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:91630600-91653600	Weak transcription	Fetal Intestine Small	intestine
16	chr8:91630600-91654200	Weak transcription	HSMMtube	muscle
17	chr8:91630600-91654400	Weak transcription	Fetal Muscle Leg	muscle
18	chr8:91630600-91655000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr8:91630600-91656800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:91630800-91652200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr8:91630800-91654400	Weak transcription	Fetal Intestine Large	intestine
22	chr8:91631000-91641000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr8:91631000-91654800	Weak transcription	NH-A	brain
24	chr8:91631200-91654400	Weak transcription	Psoas Muscle	Psoas
25	chr8:91632000-91656800	Weak transcription	Left Ventricle	heart
26	chr8:91632400-91652200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:91632600-91650200	Weak transcription	Right Atrium	heart
28	chr8:91632800-91641400	Enhancers	Brain Hippocampus Middle	brain
29	chr8:91632800-91654600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr8:91633200-91652200	Weak transcription	NHLF	lung
31	chr8:91633800-91650400	Weak transcription	Adipose Nuclei	Adipose
32	chr8:91634200-91650400	Weak transcription	Fetal Lung	lung
33	chr8:91634800-91652200	Weak transcription	Hela-S3	cervix
34	chr8:91635200-91645200	Weak transcription	NHEK	skin
35	chr8:91635200-91647200	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr8:91636600-91647000	Weak transcription	K562	blood
37	chr8:91636800-91641000	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr8:91637200-91641600	Enhancers	Primary B cells from peripheral blood	blood
39	chr8:91637600-91652200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr8:91637800-91641000	Enhancers	Brain Cingulate Gyrus	brain
41	chr8:91637800-91642400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr8:91638000-91645000	Weak transcription	HMEC	breast
43	chr8:91638000-91646600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr8:91638200-91654800	Weak transcription	Placenta	Placenta
45	chr8:91638400-91641800	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr8:91638400-91641800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr8:91638600-91642400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr8:91638600-91645400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr8:91638600-91645400	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr8:91638600-91645400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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