Variant report

Variant	rs7823461
Chromosome Location	chr8:91581075-91581076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91579817..91581638-chr8:91582195..91584431,2	MCF-7	breast:
2	chr8:91012503..91016326-chr8:91580464..91585421,8	MCF-7	breast:
3	chr8:91013689..91014427-chr8:91580931..91581653,2	MCF-7	breast:
4	chr8:91579655..91581249-chr8:91589234..91591557,2	K562	blood:

Variant related genes	Relation type
ENSG00000104325	Chromatin interaction
ENSG00000104320	Chromatin interaction

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10086401	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10086462	0.87[ASN][1000 genomes]
rs10091275	0.93[ASN][1000 genomes]
rs10103198	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10105142	0.85[EUR][1000 genomes]
rs10112242	0.89[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10283086	0.88[ASN][1000 genomes]
rs10504894	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs10808619	0.88[ASN][1000 genomes]
rs10808620	0.88[ASN][1000 genomes]
rs10956720	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10956730	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs10956736	0.90[ASN][1000 genomes]
rs10956748	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10956749	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10956750	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11776824	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11779312	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11784529	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12545279	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12545351	0.88[ASN][1000 genomes]
rs12545726	0.90[EUR][1000 genomes]
rs12547016	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12548741	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12548806	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12678527	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs12680211	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13254212	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13255452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13262354	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13266461	0.84[CEU][hapmap]
rs13267237	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13267989	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13268594	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13277387	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs13279263	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1476427	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1476428	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16905041	0.85[CEU][hapmap];0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs1858673	0.93[ASN][1000 genomes]
rs1858674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2023624	0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs2023626	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2073640	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2105965	0.96[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2105967	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2105968	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2157607	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2187981	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2187982	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2205151	0.83[CEU][hapmap]
rs2205152	0.87[CEU][hapmap]
rs2213886	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2285231	0.92[EUR][1000 genomes]
rs2285232	0.93[ASN][1000 genomes]
rs2285233	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34126139	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35159732	0.88[EUR][1000 genomes]
rs35409073	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36046037	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3950221	0.81[CEU][hapmap]
rs4140679	0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs4140680	0.81[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4495386	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4495387	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4734237	0.84[EUR][1000 genomes]
rs4734250	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs4734266	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734268	0.88[ASN][1000 genomes]
rs4734269	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4735201	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs4735210	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4735230	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4735236	0.82[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs4735256	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4735260	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4735268	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4735295	0.84[CEU][hapmap]
rs5005585	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62526886	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6986001	0.92[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6986088	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6986359	0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs6986689	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6988733	0.91[EUR][1000 genomes]
rs6989123	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6993715	0.86[EUR][1000 genomes]
rs6998150	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6999898	0.92[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7000724	0.82[EUR][1000 genomes]
rs7004287	0.88[ASN][1000 genomes]
rs7006279	0.90[ASN][1000 genomes]
rs7007102	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7007129	0.88[ASN][1000 genomes]
rs7008765	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7013893	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7014073	0.87[ASN][1000 genomes]
rs7014967	0.93[ASN][1000 genomes]
rs7016220	0.82[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs715057	0.89[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7463641	0.81[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs756568	0.93[ASN][1000 genomes]
rs756569	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7812970	0.92[EUR][1000 genomes]
rs7817954	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7819519	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7824376	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs7824511	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs7826178	0.92[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7837109	0.89[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7837230	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7840846	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9297871	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9643298	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9643307	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9643308	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9693182	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9694450	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91571000-91584600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:91580200-91581200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr8:91580200-91581400	Enhancers	H9 Cell Line	embryonic stem cell
4	chr8:91580200-91582400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr8:91580400-91581800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:91580400-91581800	Enhancers	HMEC	breast
7	chr8:91580400-91588200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr8:91580600-91581800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:91580600-91581800	Enhancers	NHEK	skin
10	chr8:91580600-91586000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr8:91580600-91587000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr8:91580800-91581600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:91580800-91581800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:91580800-91582800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr8:91581000-91581200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr8:91581000-91581200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:91581000-91581400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr8:91581000-91581400	Enhancers	Fetal Heart	heart
19	chr8:91581000-91581400	Enhancers	Hela-S3	cervix
20	chr8:91581000-91581600	Enhancers	Placenta Amnion	Placenta Amnion
21	chr8:91581000-91581800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:91581000-91581800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:91581000-91581800	Enhancers	Osteobl	bone

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