Variant report

Variant	rs10956750
Chromosome Location	chr8:91621704-91621705
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:91621367-91622043	ProgFib	skin:	n/a	n/a
2	POLR2A	chr8:91621343-91621754	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr8:91620458-91624767	MCF-7	breast:	n/a	n/a
4	PML	chr8:91621194-91622174	MCF-7	breast:	n/a	n/a
5	POLR2A	chr8:91621361-91621819	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91614062..91616236-chr8:91620132..91623059,2	K562	blood:
2	chr8:91621323..91626406-chr8:91655507..91659501,5	MCF-7	breast:
3	chr8:91621172..91624460-chr8:91656090..91658509,4	MCF-7	breast:
4	chr8:91619777..91622363-chr8:91625498..91627385,2	MCF-7	breast:
5	chr8:90996675..90999538-chr8:91621652..91623385,2	MCF-7	breast:
6	chr8:91613334..91617171-chr8:91619742..91623247,5	MCF-7	breast:
7	chr8:91614062..91617151-chr8:91620132..91623059,3	K562	blood:

No data

Variant related genes	Relation type
LINC01030	TF binding region
ENSG00000180694	Chromatin interaction
ENSG00000246792	Chromatin interaction
ENSG00000104320	Chromatin interaction

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs10086401	0.87[ASN][1000 genomes]
rs10086462	0.81[ASN][1000 genomes]
rs10091275	0.87[ASN][1000 genomes]
rs10103198	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10112242	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10283086	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10504894	0.84[CEU][hapmap]
rs10808619	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10808620	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10956720	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10956730	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10956736	0.91[ASN][1000 genomes]
rs10956748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956749	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11776824	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11779312	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11784529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12545279	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12545351	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12545726	0.84[EUR][1000 genomes]
rs12547016	0.87[ASN][1000 genomes]
rs12548741	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12548806	0.87[ASN][1000 genomes]
rs12678527	0.84[CEU][hapmap]
rs12680211	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254212	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13255452	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13262354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13266461	0.84[CEU][hapmap]
rs13267237	0.80[ASN][1000 genomes]
rs13267989	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13268594	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13277387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13279222	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13279263	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1476427	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1476428	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16905041	0.85[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1858673	0.87[ASN][1000 genomes]
rs1858674	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2023624	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2023626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2073640	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2105965	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs2105967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2105968	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2157607	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2187981	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2187982	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2205151	0.83[CEU][hapmap]
rs2205152	0.87[CEU][hapmap]
rs2213886	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2285231	0.86[EUR][1000 genomes]
rs2285232	0.87[ASN][1000 genomes]
rs2285233	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34126139	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35159732	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35409073	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36046037	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3950221	0.81[CEU][hapmap]
rs4140679	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4140680	0.81[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4324886	0.80[EUR][1000 genomes]
rs4495386	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4495387	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4734250	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4734266	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734268	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735201	0.87[CEU][hapmap]
rs4735210	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4735230	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4735236	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs4735256	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4735260	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735268	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735295	0.84[CEU][hapmap]
rs5005585	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62526886	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6986001	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6986088	0.85[EUR][1000 genomes]
rs6986359	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6986689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988733	0.85[EUR][1000 genomes]
rs6989123	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6998150	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6999898	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7004287	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7006279	0.93[ASN][1000 genomes]
rs7007102	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007129	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7008765	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7013893	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7014073	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7014967	0.87[ASN][1000 genomes]
rs7016220	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs715057	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7463641	0.81[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs756568	0.87[ASN][1000 genomes]
rs756569	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7812970	0.85[EUR][1000 genomes]
rs7817954	0.85[EUR][1000 genomes]
rs7819519	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7823461	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7824376	0.84[CEU][hapmap]
rs7824511	0.84[CEU][hapmap]
rs7826178	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7837109	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7837230	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7840846	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9297871	0.87[ASN][1000 genomes]
rs9643298	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9643307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9643308	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9693182	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9694450	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91606600-91621800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:91606600-91627600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:91617000-91628600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:91617400-91628600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:91618200-91631600	Weak transcription	Stomach Mucosa	stomach
6	chr8:91619000-91628600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:91620000-91623800	Weak transcription	Pancreas	Pancrea
8	chr8:91620000-91627200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:91620000-91630000	Weak transcription	HSMMtube	muscle
10	chr8:91620400-91622000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:91620400-91628400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr8:91620400-91628400	Weak transcription	Brain Hippocampus Middle	brain
13	chr8:91620400-91630800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr8:91620400-91652200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr8:91621000-91621800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr8:91621000-91627200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr8:91621000-91628600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:91621000-91628800	Weak transcription	A549	lung
19	chr8:91621200-91621800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr8:91621200-91628600	Weak transcription	Brain Anterior Caudate	brain
21	chr8:91621400-91622200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr8:91621400-91627400	Weak transcription	Primary B cells from peripheral blood	blood
23	chr8:91621600-91621800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr8:91621600-91621800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr8:91621600-91621800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
26	chr8:91621600-91621800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
27	chr8:91621600-91621800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr8:91621600-91622400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
29	chr8:91621600-91622400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr8:91621600-91624000	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr8:91621600-91624200	ZNF genes & repeats	GM12878-XiMat	blood

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