Variant report

Variant	rs62526886
Chromosome Location	chr8:91627676-91627677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91625597..91628438-chr8:91655744..91658376,3	MCF-7	breast:
2	chr8:91625975..91628340-chr8:91641388..91642940,2	MCF-7	breast:
3	chr8:91625970..91628020-chr8:91651909..91654017,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180694	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10086401	0.87[ASN][1000 genomes]
rs10086462	0.81[ASN][1000 genomes]
rs10091275	0.87[ASN][1000 genomes]
rs10103198	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10112242	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10283086	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10808619	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10808620	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10956720	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10956730	0.90[ASN][1000 genomes]
rs10956736	0.91[ASN][1000 genomes]
rs10956748	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956749	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956750	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11776824	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11779312	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11784529	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12545279	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12545351	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12545726	0.84[EUR][1000 genomes]
rs12547016	0.87[ASN][1000 genomes]
rs12548741	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12548806	0.87[ASN][1000 genomes]
rs12680211	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254212	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13255452	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13262354	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13267237	0.80[ASN][1000 genomes]
rs13267989	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13268594	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13279222	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13279263	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1476427	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1476428	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16905041	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1858673	0.87[ASN][1000 genomes]
rs1858674	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2023624	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2023626	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2073640	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2105965	0.85[EUR][1000 genomes]
rs2105967	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2105968	0.90[ASN][1000 genomes]
rs2157607	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2187981	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2187982	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2213886	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2285231	0.86[EUR][1000 genomes]
rs2285232	0.87[ASN][1000 genomes]
rs2285233	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34126139	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35159732	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35409073	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36046037	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4140679	0.90[ASN][1000 genomes]
rs4140680	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4324886	0.80[EUR][1000 genomes]
rs4495386	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4495387	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4734250	0.90[ASN][1000 genomes]
rs4734266	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734268	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734269	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735210	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4735230	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4735236	0.83[ASN][1000 genomes]
rs4735256	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4735260	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735268	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5005585	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6986001	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6986088	0.85[EUR][1000 genomes]
rs6986359	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6986689	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988733	0.85[EUR][1000 genomes]
rs6989123	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6998150	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6999898	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7004287	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7006279	0.93[ASN][1000 genomes]
rs7007102	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007129	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7008765	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7013893	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7014073	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7014967	0.87[ASN][1000 genomes]
rs7016220	0.90[ASN][1000 genomes]
rs715057	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7463641	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs756568	0.87[ASN][1000 genomes]
rs756569	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7812970	0.85[EUR][1000 genomes]
rs7817954	0.85[EUR][1000 genomes]
rs7819519	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7823461	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7826178	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7837109	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7837230	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7840846	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9297871	0.87[ASN][1000 genomes]
rs9643298	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9643307	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9643308	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9693182	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9694450	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1827745	chr8:91623737-91660193	ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91617000-91628600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr8:91617400-91628600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:91618200-91631600	Weak transcription	Stomach Mucosa	stomach
4	chr8:91619000-91628600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:91620000-91630000	Weak transcription	HSMMtube	muscle
6	chr8:91620400-91628400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr8:91620400-91628400	Weak transcription	Brain Hippocampus Middle	brain
8	chr8:91620400-91630800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr8:91620400-91652200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr8:91621000-91628600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:91621000-91628800	Weak transcription	A549	lung
12	chr8:91621200-91628600	Weak transcription	Brain Anterior Caudate	brain
13	chr8:91621800-91628400	Weak transcription	Adipose Nuclei	Adipose
14	chr8:91621800-91628600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:91621800-91628600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:91621800-91628600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:91622000-91628400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:91622000-91628800	Weak transcription	Liver	Liver
19	chr8:91622400-91628000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr8:91622400-91628600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr8:91622400-91634600	Weak transcription	NHEK	skin
22	chr8:91622800-91628200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr8:91622800-91628600	Weak transcription	Lung	lung
24	chr8:91622800-91628800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr8:91622800-91630800	Weak transcription	K562	blood
26	chr8:91623000-91628200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr8:91623200-91628600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr8:91624000-91628800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr8:91624000-91654800	Weak transcription	Pancreas	Pancrea
30	chr8:91624200-91628400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr8:91624200-91628600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr8:91624200-91652200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr8:91624400-91644800	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr8:91624600-91635000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr8:91626000-91627800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr8:91626000-91628000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr8:91627000-91628600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr8:91627200-91627800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr8:91627400-91630800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
40	chr8:91627600-91628600	Weak transcription	Aorta	Aorta
41	chr8:91627600-91629800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr8:91627600-91633000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
43	chr8:91627600-91634000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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