Variant report

Variant	rs13268594
Chromosome Location	chr8:91588545-91588546
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91586951..91591432-chr8:91656063..91661127,8	MCF-7	breast:
2	chr8:91569217..91570978-chr8:91587022..91589931,2	MCF-7	breast:
3	chr8:91565327..91567860-chr8:91586497..91589289,2	MCF-7	breast:
4	chr8:91584429..91589445-chr8:91589711..91593163,5	K562	blood:

Variant related genes	Relation type
ENSG00000180694	Chromatin interaction
ENSG00000246792	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs10086401	0.90[ASN][1000 genomes]
rs10086462	0.84[ASN][1000 genomes]
rs10091275	0.90[ASN][1000 genomes]
rs10103198	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10105142	0.81[EUR][1000 genomes]
rs10112242	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10283086	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10504894	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs10808619	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10808620	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10956720	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10956730	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10956736	0.91[ASN][1000 genomes]
rs10956748	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10956749	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10956750	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11776824	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11779312	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11784529	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12545279	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12545351	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12545726	0.86[EUR][1000 genomes]
rs12547016	0.90[ASN][1000 genomes]
rs12548741	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12548806	0.90[ASN][1000 genomes]
rs12678527	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs12680211	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13254212	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13255452	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13262354	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13266461	0.88[CEU][hapmap]
rs13267237	0.83[ASN][1000 genomes]
rs13267989	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13277387	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs13279222	0.82[EUR][1000 genomes]
rs13279263	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1476427	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1476428	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16905041	0.81[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap];0.84[ASN][1000 genomes]
rs1858673	0.90[ASN][1000 genomes]
rs1858674	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2023624	0.88[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2023626	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2073640	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2105965	0.92[CEU][hapmap];0.81[CHB][hapmap];0.87[EUR][1000 genomes]
rs2105967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2105968	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2157607	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2187981	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2187982	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2205152	0.83[CEU][hapmap]
rs2213886	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2285231	0.88[EUR][1000 genomes]
rs2285232	0.90[ASN][1000 genomes]
rs2285233	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34126139	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35159732	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35409073	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36046037	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4140679	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4140680	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4495386	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4495387	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4734250	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4734266	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4734268	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4734269	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4735201	0.83[CEU][hapmap]
rs4735210	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4735230	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4735236	0.82[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs4735256	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4735260	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4735268	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4735295	0.88[CEU][hapmap]
rs5005585	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62526886	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6986001	0.88[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6986088	0.87[EUR][1000 genomes]
rs6986359	0.88[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6986689	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6988733	0.87[EUR][1000 genomes]
rs6989123	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6993715	0.81[EUR][1000 genomes]
rs6998150	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6999898	0.88[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7004287	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7006279	0.91[ASN][1000 genomes]
rs7007102	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7007129	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7008765	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7013893	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7014073	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7014967	0.90[ASN][1000 genomes]
rs7016220	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs715057	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7463641	0.86[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs756568	0.90[ASN][1000 genomes]
rs756569	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7812970	0.87[EUR][1000 genomes]
rs7817954	0.87[EUR][1000 genomes]
rs7819519	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7823461	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7824376	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs7824511	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs7826178	0.88[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7837109	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7837230	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7840846	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9297871	0.90[ASN][1000 genomes]
rs9643298	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9643307	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9643308	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9693182	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9694450	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91585200-91588600	Enhancers	Fetal Heart	heart
2	chr8:91585600-91590800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:91585800-91591000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:91586000-91590600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:91586600-91590600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:91586600-91591000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:91586800-91588600	Enhancers	Liver	Liver
8	chr8:91587000-91590800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr8:91587400-91588600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:91587400-91590600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr8:91587600-91588600	Enhancers	Fetal Muscle Leg	muscle
12	chr8:91587800-91588600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:91588000-91591400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr8:91588200-91589400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr8:91588200-91592600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:91588200-91592600	Weak transcription	HSMM	muscle
17	chr8:91588400-91589200	Weak transcription	K562	blood
18	chr8:91588400-91590400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr8:91588400-91591400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:91588400-91592200	Weak transcription	HSMMtube	muscle

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