Variant report

Variant	rs6988733
Chromosome Location	chr8:91535686-91535687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91530400..91534566-chr8:91534971..91538885,4	MCF-7	breast:
2	chr8:91532246..91535757-chr8:91536085..91540118,3	MCF-7	breast:

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs10086401	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10086462	0.84[EUR][1000 genomes]
rs10091275	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10103198	0.84[EUR][1000 genomes]
rs10105142	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10112242	0.82[CHB][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs1028255	0.81[EUR][1000 genomes]
rs10283086	0.83[EUR][1000 genomes]
rs10504894	0.93[EUR][1000 genomes]
rs10808619	0.83[EUR][1000 genomes]
rs10808620	0.83[EUR][1000 genomes]
rs10956720	0.91[EUR][1000 genomes]
rs10956730	0.86[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs10956748	0.84[EUR][1000 genomes]
rs10956749	0.85[EUR][1000 genomes]
rs10956750	0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs11776824	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11779312	0.82[EUR][1000 genomes]
rs11784529	0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs12545279	0.85[EUR][1000 genomes]
rs12545351	0.84[EUR][1000 genomes]
rs12545726	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12547016	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12548741	0.85[EUR][1000 genomes]
rs12548806	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12674903	0.83[EUR][1000 genomes]
rs12678527	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12680211	0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs13254212	0.91[EUR][1000 genomes]
rs13255452	0.80[CHB][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes]
rs13262354	0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs13267237	0.85[EUR][1000 genomes]
rs13267989	0.91[EUR][1000 genomes]
rs13268594	0.81[CHB][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs13268721	0.84[EUR][1000 genomes]
rs13277387	0.80[JPT][hapmap]
rs13279222	0.83[EUR][1000 genomes]
rs13279263	0.82[EUR][1000 genomes]
rs1476427	0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1476428	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16905041	0.85[CHB][hapmap]
rs1858673	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1858674	0.81[CHB][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes]
rs2023624	0.82[CHB][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs2023626	0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs2073640	0.80[CHB][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes]
rs2105965	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2105967	0.83[CHB][hapmap];0.88[EUR][1000 genomes]
rs2105968	0.86[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs2157607	0.81[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs2187981	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2187982	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2205151	0.84[EUR][1000 genomes]
rs2205152	0.84[EUR][1000 genomes]
rs2213886	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2285231	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2285232	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2285233	0.86[EUR][1000 genomes]
rs2879361	0.81[EUR][1000 genomes]
rs34126139	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs35159732	0.81[EUR][1000 genomes]
rs35361206	0.85[EUR][1000 genomes]
rs35409073	0.84[EUR][1000 genomes]
rs35816262	0.86[EUR][1000 genomes]
rs36046037	0.83[EUR][1000 genomes]
rs3950221	0.84[EUR][1000 genomes]
rs4140679	0.80[JPT][hapmap];0.80[EUR][1000 genomes]
rs4140680	0.81[JPT][hapmap];0.80[EUR][1000 genomes]
rs4495386	0.85[EUR][1000 genomes]
rs4495387	0.82[EUR][1000 genomes]
rs4734237	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734250	0.86[CHB][hapmap];0.80[JPT][hapmap];0.80[ASN][1000 genomes]
rs4734266	0.83[EUR][1000 genomes]
rs4734268	0.83[EUR][1000 genomes]
rs4734269	0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs4735190	0.86[EUR][1000 genomes]
rs4735201	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4735210	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4735230	0.91[EUR][1000 genomes]
rs4735236	0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs4735256	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4735260	0.85[EUR][1000 genomes]
rs4735268	0.85[EUR][1000 genomes]
rs5005585	0.84[EUR][1000 genomes]
rs56784954	0.85[EUR][1000 genomes]
rs62526886	0.85[EUR][1000 genomes]
rs6471113	0.82[EUR][1000 genomes]
rs6986001	0.86[CHB][hapmap];0.86[EUR][1000 genomes]
rs6986088	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6986359	0.81[CHB][hapmap];0.80[JPT][hapmap];0.83[EUR][1000 genomes]
rs6986689	0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs6988302	0.81[EUR][1000 genomes]
rs6989123	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6993715	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6995399	0.81[EUR][1000 genomes]
rs6998150	0.82[EUR][1000 genomes]
rs6999898	0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs7000724	0.89[EUR][1000 genomes]
rs7004287	0.83[EUR][1000 genomes]
rs7007102	0.85[EUR][1000 genomes]
rs7007129	0.83[EUR][1000 genomes]
rs7008172	0.81[EUR][1000 genomes]
rs7008765	0.85[EUR][1000 genomes]
rs7012741	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7013893	0.91[EUR][1000 genomes]
rs7014073	0.83[EUR][1000 genomes]
rs7014967	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7016220	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs7017295	0.81[EUR][1000 genomes]
rs7017630	0.81[EUR][1000 genomes]
rs715057	0.82[CHB][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs7463641	0.86[CHB][hapmap]
rs756568	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs756569	0.85[EUR][1000 genomes]
rs7812970	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817954	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7819519	0.84[EUR][1000 genomes]
rs7823461	0.81[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs7824376	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7824511	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7826178	0.86[CHB][hapmap];0.86[EUR][1000 genomes]
rs7837109	0.82[CHB][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs7837230	0.91[EUR][1000 genomes]
rs7840846	0.91[EUR][1000 genomes]
rs9297871	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9643298	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9643307	0.85[EUR][1000 genomes]
rs9643308	0.85[EUR][1000 genomes]
rs9693182	0.85[EUR][1000 genomes]
rs9694450	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981885	chr8:91528144-91537088	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91533800-91542200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:91533800-91545800	Weak transcription	HSMMtube	muscle

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