The 2.0 version of rSNPBase

Variant report

Variant rs4653493
Chromosome Location chr1:227489258-227489259
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227462600-227500200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr1:227469200-227500200 Weak transcription Left Ventricle heart
3 chr1:227469200-227502600 Weak transcription HSMM muscle
4 chr1:227469600-227501800 Weak transcription Fetal Stomach stomach
5 chr1:227475000-227491800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr1:227475000-227502000 Weak transcription Primary hematopoietic stem cells blood
7 chr1:227475200-227500200 Weak transcription Fetal Intestine Small intestine
8 chr1:227478000-227491800 Weak transcription Psoas Muscle Psoas
9 chr1:227483600-227489800 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr1:227483600-227500200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr1:227483800-227500400 Weak transcription Right Atrium heart
12 chr1:227485600-227491200 Weak transcription HUES6 Cell Line embryonic stem cell
13 chr1:227486600-227491200 Weak transcription Aorta Aorta
14 chr1:227486600-227494000 Weak transcription Brain Substantia Nigra brain
15 chr1:227486600-227494000 Weak transcription Duodenum Mucosa Duodenum
16 chr1:227486600-227497800 Weak transcription Brain Inferior Temporal Lobe brain
17 chr1:227487000-227495800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
18 chr1:227487000-227496000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
19 chr1:227487000-227496200 Weak transcription Fetal Heart heart
20 chr1:227487000-227500200 Weak transcription HMEC breast
21 chr1:227487000-227501800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
22 chr1:227487000-227501800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
23 chr1:227487000-227502000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr1:227487200-227489800 Weak transcription Brain Angular Gyrus brain
25 chr1:227487200-227494000 Weak transcription Brain Cingulate Gyrus brain
26 chr1:227487400-227493800 Weak transcription Pancreatic Islets Pancreatic Islet
27 chr1:227487400-227494000 Weak transcription Skeletal Muscle Male skeletal muscle
28 chr1:227487600-227496800 Weak transcription Cortex derived primary cultured neurospheres brain
29 chr1:227487600-227497600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
30 chr1:227487600-227502400 Weak transcription Osteobl bone
31 chr1:227487800-227490000 Weak transcription Brain Hippocampus Middle brain
32 chr1:227487800-227490800 Weak transcription iPS-18 Cell Line embryonic stem cell
33 chr1:227487800-227491000 Weak transcription HUES64 Cell Line embryonic stem cell
34 chr1:227487800-227492400 Weak transcription NHDF-Ad bronchial
35 chr1:227487800-227494200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr1:227487800-227496000 Weak transcription Breast Myoepithelial Primary Cells Breast
37 chr1:227487800-227496000 Weak transcription Adipose Nuclei Adipose
38 chr1:227487800-227497000 Weak transcription Fetal Lung lung
39 chr1:227487800-227497200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr1:227487800-227500200 Weak transcription Muscle Satellite Cultured Cells --
41 chr1:227487800-227500400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr1:227487800-227501400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr1:227488000-227489800 Weak transcription K562 blood
44 chr1:227488000-227491000 Weak transcription HUES48 Cell Line embryonic stem cell
45 chr1:227488000-227491200 Weak transcription Rectal Mucosa Donor 31 rectum
46 chr1:227488000-227494800 Weak transcription Brain Anterior Caudate brain
47 chr1:227488000-227496400 Weak transcription Hela-S3 cervix
48 chr1:227488000-227501800 Weak transcription A549 lung
49 chr1:227488200-227489800 Weak transcription ES-I3 Cell Line embryonic stem cell
50 chr1:227488400-227496400 Weak transcription HUVEC blood vessel

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Last update: Aug 31, 2015