The 2.0 version of rSNPBase

Variant report

Variant rs1464075
Chromosome Location chr1:227454071-227454072
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:37 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227414000-227459200 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:227415800-227456800 Weak transcription Cortex derived primary cultured neurospheres brain
3 chr1:227431600-227486200 Weak transcription NHDF-Ad bronchial
4 chr1:227432000-227459200 Weak transcription Fetal Lung lung
5 chr1:227432200-227455400 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr1:227432800-227455600 Weak transcription Duodenum Smooth Muscle Duodenum
7 chr1:227433000-227469000 Weak transcription Aorta Aorta
8 chr1:227434200-227455400 Weak transcription Left Ventricle heart
9 chr1:227434200-227455400 Weak transcription Right Ventricle heart
10 chr1:227434200-227455800 Weak transcription Adipose Nuclei Adipose
11 chr1:227434600-227468800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
12 chr1:227434800-227458400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr1:227435000-227457000 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr1:227440000-227456600 Weak transcription HepG2 liver
15 chr1:227440200-227456800 Weak transcription HUVEC blood vessel
16 chr1:227443400-227474000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr1:227445800-227458400 Weak transcription NHEK skin
18 chr1:227447000-227456800 Weak transcription Fetal Adrenal Gland Adrenal Gland
19 chr1:227447200-227473600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
20 chr1:227447400-227455000 Weak transcription Brain Inferior Temporal Lobe brain
21 chr1:227448400-227456400 Weak transcription Psoas Muscle Psoas
22 chr1:227448600-227457200 Weak transcription ES-I3 Cell Line embryonic stem cell
23 chr1:227449600-227473600 Weak transcription NH-A brain
24 chr1:227449800-227465200 Weak transcription K562 blood
25 chr1:227452400-227456000 Enhancers Brain Hippocampus Middle brain
26 chr1:227452800-227454400 Weak transcription Stomach Mucosa stomach
27 chr1:227452800-227463800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
28 chr1:227453000-227468600 Weak transcription Lung lung
29 chr1:227453400-227454200 Enhancers Brain Angular Gyrus brain
30 chr1:227453400-227454200 Enhancers Brain Anterior Caudate brain
31 chr1:227453600-227454600 Enhancers Colon Smooth Muscle Colon
32 chr1:227453600-227454600 Enhancers Rectal Smooth Muscle rectum
33 chr1:227453600-227454800 Enhancers Brain Cingulate Gyrus brain
34 chr1:227453600-227457200 Enhancers Brain Substantia Nigra brain
35 chr1:227453800-227454400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
36 chr1:227454000-227454200 Enhancers Ovary ovary
37 chr1:227454000-227455400 Enhancers Pancreatic Islets Pancreatic Islet

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Last update: Aug 31, 2015