Variant report

Variant	rs2718219
Chromosome Location	chr1:227414036-227414037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:227396969..227399919-chr1:227412592..227414970,2	MCF-7	breast:

Extended variants
information (count: 365 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:359)

rs_ID	r²[population]
rs10495251	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10495252	0.84[ASN][1000 genomes]
rs10753430	0.86[JPT][hapmap]
rs10799398	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10799399	0.94[ASN][1000 genomes]
rs10799401	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10799402	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10799406	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10916099	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10916100	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10916103	0.96[ASN][1000 genomes]
rs10916115	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11799960	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11800145	0.91[CEU][hapmap];0.96[YRI][hapmap]
rs11800390	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11800705	0.91[CEU][hapmap]
rs11800982	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11801500	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11801885	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11802394	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11803664	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11804358	0.90[CEU][hapmap];0.96[YRI][hapmap]
rs11804613	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs11804709	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11805097	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11805221	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11805679	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11806180	0.80[AMR][1000 genomes]
rs11806188	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11806482	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11807620	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11808884	0.91[CEU][hapmap];0.97[YRI][hapmap]
rs11810471	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11810506	0.91[CEU][hapmap];0.96[YRI][hapmap]
rs11811972	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12143378	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12402087	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12407020	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12407033	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12407082	0.85[CEU][hapmap];0.96[YRI][hapmap]
rs12409411	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12410073	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12410267	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12410431	0.91[CEU][hapmap];0.82[CHB][hapmap];0.96[YRI][hapmap]
rs1355815	0.95[ASN][1000 genomes]
rs1355817	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1398858	0.91[ASN][1000 genomes]
rs1398859	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1398860	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1398861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1398862	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1464075	0.94[ASN][1000 genomes]
rs1473599	0.95[ASN][1000 genomes]
rs1513599	0.93[ASN][1000 genomes]
rs1513604	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1513606	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1513608	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1513611	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1513612	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1513614	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1513615	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1513616	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1513618	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1513619	0.89[ASN][1000 genomes]
rs1513620	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1513621	0.94[ASN][1000 genomes]
rs1513622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1533283	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1543102	0.86[JPT][hapmap]
rs1546556	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1546558	0.93[ASN][1000 genomes]
rs1567801	0.93[ASN][1000 genomes]
rs1567802	0.95[ASN][1000 genomes]
rs1588716	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1606550	0.96[ASN][1000 genomes]
rs16847571	0.86[ASN][1000 genomes]
rs16847574	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16847582	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16847617	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16847618	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16847625	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs16847628	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16847631	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16847647	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16847649	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1849548	0.96[ASN][1000 genomes]
rs1849549	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1849551	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1849552	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1877617	0.95[ASN][1000 genomes]
rs1877618	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1877619	0.97[ASN][1000 genomes]
rs1877621	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1913342	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1913343	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1913345	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1929853	0.91[CEU][hapmap];0.97[YRI][hapmap]
rs1949227	0.89[ASN][1000 genomes]
rs1969230	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1996133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2063662	0.92[ASN][1000 genomes]
rs2063663	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2063664	0.93[ASN][1000 genomes]
rs2063665	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2063666	0.97[ASN][1000 genomes]
rs2063668	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2090006	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2102631	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2102635	0.89[ASN][1000 genomes]
rs2102636	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2102637	0.89[ASN][1000 genomes]
rs2102639	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2175789	0.83[ASN][1000 genomes]
rs2203278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2203279	0.97[ASN][1000 genomes]
rs2221931	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2225508	0.90[CEU][hapmap];0.93[YRI][hapmap]
rs2313436	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2313497	0.91[ASN][1000 genomes]
rs2313499	0.90[ASN][1000 genomes]
rs2313598	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2492629	0.88[CEU][hapmap]
rs2670440	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2670441	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2670443	0.98[ASN][1000 genomes]
rs2670444	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2670445	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2670447	0.96[ASN][1000 genomes]
rs2670448	0.97[ASN][1000 genomes]
rs2670450	0.95[ASN][1000 genomes]
rs2670451	0.97[ASN][1000 genomes]
rs2670452	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2670453	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2670454	0.97[ASN][1000 genomes]
rs2670457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2670458	0.96[ASN][1000 genomes]
rs2670460	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2670463	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2670465	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2670466	0.94[ASN][1000 genomes]
rs2670467	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2670469	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2670472	0.94[ASN][1000 genomes]
rs2718194	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2718196	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2718197	0.96[ASN][1000 genomes]
rs2718198	0.97[ASN][1000 genomes]
rs2718199	0.98[ASN][1000 genomes]
rs2718200	0.97[ASN][1000 genomes]
rs2718201	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2718207	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2718209	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2718210	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2718211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2718213	0.94[ASN][1000 genomes]
rs2718215	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2718216	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2718217	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718218	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2718225	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2813945	0.89[ASN][1000 genomes]
rs2813946	0.90[ASN][1000 genomes]
rs2813949	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2813951	0.98[ASN][1000 genomes]
rs2813952	0.98[ASN][1000 genomes]
rs2813953	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2813954	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2813958	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2813960	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2813961	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2813962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2813963	0.93[ASN][1000 genomes]
rs2813964	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2813968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2813973	0.86[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs2813974	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2813975	0.97[ASN][1000 genomes]
rs2813976	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2813978	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2813980	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2813981	0.96[ASN][1000 genomes]
rs2813982	0.95[ASN][1000 genomes]
rs2872312	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3106474	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3106477	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3127001	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3127002	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3127003	0.94[ASN][1000 genomes]
rs35903393	0.97[ASN][1000 genomes]
rs3768434	0.94[ASN][1000 genomes]
rs3768435	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3768436	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3795455	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3795456	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4233223	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4266849	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4281297	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4284230	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4292922	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4298700	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4306096	0.84[ASN][1000 genomes]
rs4322202	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4323672	0.94[ASN][1000 genomes]
rs4338327	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4339828	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4344297	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4415529	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4500280	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4525011	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4545305	0.84[ASN][1000 genomes]
rs4568795	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4582756	0.89[ASN][1000 genomes]
rs4595342	0.90[ASN][1000 genomes]
rs4630094	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4653486	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4653488	0.84[ASN][1000 genomes]
rs4653490	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4653802	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4653803	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4653804	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4653805	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4653806	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4653807	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4653808	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4653809	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4653814	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4653816	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs4653817	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs4653818	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4653819	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4653820	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4653821	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs489565	0.90[CEU][hapmap];0.96[YRI][hapmap]
rs490517	0.90[CEU][hapmap];0.81[CHB][hapmap];0.93[YRI][hapmap]
rs497291	0.90[CEU][hapmap];0.96[YRI][hapmap]
rs511679	0.85[CEU][hapmap];0.96[YRI][hapmap]
rs529430	0.95[CEU][hapmap];0.81[CHB][hapmap];0.96[YRI][hapmap]
rs56703671	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56830706	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs583729	0.90[CEU][hapmap];0.96[YRI][hapmap]
rs58442442	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59187211	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59596249	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59981133	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60115015	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60585433	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60592061	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6413866	0.89[ASN][1000 genomes]
rs6426570	0.89[ASN][1000 genomes]
rs6426571	0.91[ASN][1000 genomes]
rs6426572	0.95[ASN][1000 genomes]
rs6426573	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6426575	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6426576	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6426579	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6426580	0.94[ASN][1000 genomes]
rs6426581	0.95[ASN][1000 genomes]
rs6426582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6426583	0.95[ASN][1000 genomes]
rs6426585	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6426586	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6426588	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6426589	0.94[ASN][1000 genomes]
rs6426590	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6426592	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6426593	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6426594	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6426595	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66475802	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs664815	0.91[CEU][hapmap];0.97[YRI][hapmap]
rs66496813	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66523880	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6659322	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6662266	0.92[ASN][1000 genomes]
rs6662378	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6669745	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6670934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66738032	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6675680	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66765246	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6681424	0.91[CEU][hapmap];0.97[YRI][hapmap]
rs6684840	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6685492	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6690326	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6690668	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6691882	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6693234	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6695072	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6695387	0.96[ASN][1000 genomes]
rs6695923	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6696485	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6697372	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6700070	0.81[ASN][1000 genomes]
rs6700591	0.96[ASN][1000 genomes]
rs6703900	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67316436	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67343460	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67400293	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67715027	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67723257	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs68043093	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs68077109	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72632804	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72632805	0.88[ASN][1000 genomes]
rs72632806	0.89[ASN][1000 genomes]
rs72632807	0.85[ASN][1000 genomes]
rs72632809	0.84[ASN][1000 genomes]
rs72632810	0.84[ASN][1000 genomes]
rs72632811	0.84[ASN][1000 genomes]
rs72632812	0.84[ASN][1000 genomes]
rs72632813	0.83[ASN][1000 genomes]
rs72632814	0.84[ASN][1000 genomes]
rs72632815	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72632816	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72632819	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7367212	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7416327	0.90[ASN][1000 genomes]
rs7418070	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7513776	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7514796	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7519849	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7520364	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7520769	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7523176	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7527825	0.95[ASN][1000 genomes]
rs7529461	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7530080	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7530644	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7531576	0.91[CEU][hapmap];0.82[CHB][hapmap];0.96[YRI][hapmap]
rs7535202	0.93[ASN][1000 genomes]
rs7535381	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7539423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7539540	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7540055	0.86[JPT][hapmap]
rs7540282	0.93[ASN][1000 genomes]
rs7540463	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7541220	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7541365	0.96[ASN][1000 genomes]
rs7541499	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7541698	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7545239	0.96[ASN][1000 genomes]
rs7546181	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7546494	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7549619	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7549822	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7550555	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7552957	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7553315	0.96[ASN][1000 genomes]
rs7554168	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7555278	0.96[ASN][1000 genomes]
rs938256	0.95[ASN][1000 genomes]
rs9426548	1.00[ASN][1000 genomes]
rs9426555	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9426556	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9426606	0.91[CEU][hapmap];0.97[YRI][hapmap]
rs9426609	0.98[ASN][1000 genomes]
rs9426617	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9426619	0.90[ASN][1000 genomes]
rs9426620	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003656	chr1:227034700-227559665	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv535318	chr1:227034700-227559665	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2830098	chr1:227295716-227422234	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv534002	chr1:227315186-228047108	Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
5	nsv873242	chr1:227371906-227579344	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv549271	chr1:227411003-227581017	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:227380200-227421800	Weak transcription	Ovary	ovary
2	chr1:227383600-227421800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:227386200-227433400	Weak transcription	Fetal Stomach	stomach
4	chr1:227399400-227415400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:227400400-227426800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:227402400-227430600	Weak transcription	Pancreas	Pancrea
7	chr1:227405600-227421800	Weak transcription	Gastric	stomach
8	chr1:227406400-227417200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:227407200-227432400	Weak transcription	Right Ventricle	heart
10	chr1:227408400-227415200	Weak transcription	Fetal Kidney	kidney
11	chr1:227411800-227430600	Weak transcription	Right Atrium	heart
12	chr1:227411800-227431400	Weak transcription	Fetal Intestine Small	intestine
13	chr1:227412600-227414200	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr1:227412800-227414600	Enhancers	Stomach Mucosa	stomach
15	chr1:227413000-227414200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:227413000-227414200	Enhancers	Hela-S3	cervix
17	chr1:227413000-227414400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:227413000-227414400	Enhancers	NHEK	skin
19	chr1:227413200-227414200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:227413200-227414200	Enhancers	HSMM	muscle
21	chr1:227413200-227414200	Flanking Active TSS	HUVEC	blood vessel
22	chr1:227413200-227414200	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr1:227413400-227414200	Enhancers	A549	lung
24	chr1:227413400-227414400	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr1:227413400-227414400	Enhancers	HMEC	breast
26	chr1:227413400-227414600	Enhancers	Brain Angular Gyrus	brain
27	chr1:227413600-227414200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr1:227413600-227414200	Enhancers	Brain Hippocampus Middle	brain
29	chr1:227413600-227414200	Enhancers	Colon Smooth Muscle	Colon
30	chr1:227413600-227414200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr1:227413600-227414400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr1:227413600-227414400	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr1:227413800-227414200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr1:227413800-227414200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr1:227413800-227414200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr1:227413800-227414400	Enhancers	Brain Anterior Caudate	brain
37	chr1:227413800-227414400	Enhancers	Brain Cingulate Gyrus	brain
38	chr1:227413800-227414400	Enhancers	Brain Substantia Nigra	brain
39	chr1:227413800-227414600	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr1:227413800-227414600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr1:227414000-227414200	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr1:227414000-227414200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr1:227414000-227414400	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr1:227414000-227414400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr1:227414000-227414400	Enhancers	Muscle Satellite Cultured Cells	--
46	chr1:227414000-227414400	Enhancers	K562	blood
47	chr1:227414000-227414400	Enhancers	Osteobl	bone
48	chr1:227414000-227414600	Enhancers	NHDF-Ad	bronchial
49	chr1:227414000-227421800	Weak transcription	Left Ventricle	heart
50	chr1:227414000-227424400	Weak transcription	Psoas Muscle	Psoas

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