The 2.0 version of rSNPBase

Variant report

Variant rs2813974
Chromosome Location chr1:227428903-227428904
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227386200-227433400 Weak transcription Fetal Stomach stomach
2 chr1:227402400-227430600 Weak transcription Pancreas Pancrea
3 chr1:227407200-227432400 Weak transcription Right Ventricle heart
4 chr1:227411800-227430600 Weak transcription Right Atrium heart
5 chr1:227411800-227431400 Weak transcription Fetal Intestine Small intestine
6 chr1:227414000-227433200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
7 chr1:227414000-227459200 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr1:227414200-227433400 Weak transcription Fetal Adrenal Gland Adrenal Gland
9 chr1:227414200-227453800 Weak transcription HSMM muscle
10 chr1:227414400-227432400 Weak transcription iPS-20b Cell Line embryonic stem cell
11 chr1:227414400-227432600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr1:227415800-227456800 Weak transcription Cortex derived primary cultured neurospheres brain
13 chr1:227416200-227431800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
14 chr1:227420800-227434600 Weak transcription Spleen Spleen
15 chr1:227422000-227430800 Weak transcription Ovary ovary
16 chr1:227422600-227430800 Weak transcription Gastric stomach
17 chr1:227423000-227432400 Weak transcription Small Intestine intestine
18 chr1:227423600-227430600 Weak transcription Brain Anterior Caudate brain
19 chr1:227423600-227430800 Weak transcription Colon Smooth Muscle Colon
20 chr1:227423600-227431400 Weak transcription Skeletal Muscle Male skeletal muscle
21 chr1:227423600-227432000 Weak transcription Brain Substantia Nigra brain
22 chr1:227424000-227430800 Weak transcription Breast Myoepithelial Primary Cells Breast
23 chr1:227424600-227430800 Weak transcription NHEK skin
24 chr1:227424800-227430600 Weak transcription Psoas Muscle Psoas
25 chr1:227424800-227430800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr1:227424800-227432600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr1:227424800-227440800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
28 chr1:227425200-227432400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr1:227425400-227430600 Weak transcription Muscle Satellite Cultured Cells --
30 chr1:227425400-227430800 Weak transcription HUVEC blood vessel
31 chr1:227425400-227445200 Weak transcription Osteobl bone
32 chr1:227426000-227432400 Weak transcription Left Ventricle heart
33 chr1:227427000-227432400 Weak transcription Brain Angular Gyrus brain
34 chr1:227427200-227430600 Weak transcription Adipose Nuclei Adipose
35 chr1:227427200-227430600 Weak transcription Skeletal Muscle Female skeletal muscle
36 chr1:227427200-227430800 Weak transcription Brain Hippocampus Middle brain
37 chr1:227427200-227433200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr1:227427600-227432200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
39 chr1:227428000-227429000 Enhancers Pancreatic Islets Pancreatic Islet
40 chr1:227428000-227429000 Enhancers A549 lung
41 chr1:227428200-227429000 Enhancers HUES48 Cell Line embryonic stem cell
42 chr1:227428200-227429600 Enhancers K562 blood
43 chr1:227428400-227430600 Weak transcription Brain Inferior Temporal Lobe brain
44 chr1:227428400-227431400 Weak transcription Brain Cingulate Gyrus brain
45 chr1:227428400-227432600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
46 chr1:227428600-227430600 Weak transcription Fetal Heart heart
47 chr1:227428800-227430400 Enhancers Liver Liver

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Last update: Aug 31, 2015