The 2.0 version of rSNPBase

Variant report

Variant rs10916100
Chromosome Location chr1:227380754-227380755
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227288400-227398000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr1:227333400-227381000 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr1:227333400-227405600 Weak transcription Adipose Nuclei Adipose
4 chr1:227343200-227400400 Weak transcription A549 lung
5 chr1:227346800-227403800 Weak transcription Duodenum Smooth Muscle Duodenum
6 chr1:227346800-227405800 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr1:227346800-227406800 Weak transcription Fetal Kidney kidney
8 chr1:227347800-227385800 Weak transcription Fetal Intestine Small intestine
9 chr1:227347800-227390400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr1:227348200-227398000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr1:227348200-227398400 Weak transcription Fetal Adrenal Gland Adrenal Gland
12 chr1:227348200-227401600 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr1:227348200-227408400 Weak transcription Fetal Muscle Trunk muscle
14 chr1:227348200-227412200 Weak transcription Fetal Muscle Leg muscle
15 chr1:227355400-227386200 Weak transcription Brain Anterior Caudate brain
16 chr1:227359400-227389000 Weak transcription Right Ventricle heart
17 chr1:227360800-227401200 Weak transcription Hela-S3 cervix
18 chr1:227364000-227385800 Weak transcription Fetal Stomach stomach
19 chr1:227364200-227381000 Weak transcription Duodenum Mucosa Duodenum
20 chr1:227365800-227399400 Weak transcription Fetal Intestine Large intestine
21 chr1:227369200-227382600 Weak transcription Fetal Brain Female brain
22 chr1:227370000-227413600 Weak transcription HUES6 Cell Line embryonic stem cell
23 chr1:227371400-227381000 Weak transcription Cortex derived primary cultured neurospheres brain
24 chr1:227371600-227381600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
25 chr1:227373400-227397800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
26 chr1:227374400-227401600 Weak transcription ES-WA7 Cell Line embryonic stem cell
27 chr1:227374600-227401600 Weak transcription Left Ventricle heart
28 chr1:227374800-227391000 Weak transcription Brain Hippocampus Middle brain
29 chr1:227375200-227386800 Weak transcription iPS-20b Cell Line embryonic stem cell
30 chr1:227375600-227410800 Weak transcription HepG2 liver
31 chr1:227376600-227381200 Weak transcription iPS-18 Cell Line embryonic stem cell
32 chr1:227376600-227412600 Weak transcription Fetal Lung lung
33 chr1:227377000-227388800 Weak transcription Small Intestine intestine
34 chr1:227377800-227381000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
35 chr1:227377800-227381800 Strong transcription HUVEC blood vessel
36 chr1:227378000-227389400 Weak transcription Colon Smooth Muscle Colon
37 chr1:227378400-227401000 Weak transcription Placenta Placenta
38 chr1:227379000-227381000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr1:227379000-227381200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr1:227379000-227398000 Weak transcription Breast Myoepithelial Primary Cells Breast
41 chr1:227379000-227398000 Weak transcription Liver Liver
42 chr1:227379600-227399200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
43 chr1:227380000-227381600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr1:227380200-227381400 Weak transcription Skeletal Muscle Male skeletal muscle
45 chr1:227380200-227385800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
46 chr1:227380200-227385800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr1:227380200-227391200 Weak transcription Brain Cingulate Gyrus brain
48 chr1:227380200-227402200 Weak transcription Skeletal Muscle Female skeletal muscle
49 chr1:227380200-227405200 Weak transcription Gastric stomach
50 chr1:227380200-227421800 Weak transcription Ovary ovary

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Last update: Aug 31, 2015