The 2.0 version of rSNPBase

Variant report

Variant rs2813961
Chromosome Location chr1:227442598-227442599
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227414000-227459200 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:227414200-227453800 Weak transcription HSMM muscle
3 chr1:227415800-227456800 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr1:227425400-227445200 Weak transcription Osteobl bone
5 chr1:227431600-227486200 Weak transcription NHDF-Ad bronchial
6 chr1:227431800-227443000 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr1:227432000-227459200 Weak transcription Fetal Lung lung
8 chr1:227432200-227455400 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr1:227432600-227448000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
10 chr1:227432800-227446000 Weak transcription HUES64 Cell Line embryonic stem cell
11 chr1:227432800-227455600 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr1:227433000-227446000 Weak transcription ES-I3 Cell Line embryonic stem cell
13 chr1:227433000-227446000 Weak transcription HUES48 Cell Line embryonic stem cell
14 chr1:227433000-227469000 Weak transcription Aorta Aorta
15 chr1:227433200-227452800 Weak transcription Ovary ovary
16 chr1:227434000-227444200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
17 chr1:227434000-227446800 Weak transcription Brain Inferior Temporal Lobe brain
18 chr1:227434000-227447000 Weak transcription Brain Hippocampus Middle brain
19 chr1:227434000-227453400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
20 chr1:227434200-227442800 Weak transcription Fetal Stomach stomach
21 chr1:227434200-227455400 Weak transcription Left Ventricle heart
22 chr1:227434200-227455400 Weak transcription Right Ventricle heart
23 chr1:227434200-227455800 Weak transcription Adipose Nuclei Adipose
24 chr1:227434400-227442800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr1:227434400-227443400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
26 chr1:227434400-227446000 Weak transcription Brain Substantia Nigra brain
27 chr1:227434600-227468800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
28 chr1:227434800-227443000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr1:227434800-227458400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr1:227435000-227457000 Weak transcription Skeletal Muscle Male skeletal muscle
31 chr1:227435600-227453600 Weak transcription Fetal Intestine Small intestine
32 chr1:227437800-227443400 Weak transcription Fetal Brain Female brain
33 chr1:227438800-227448000 Weak transcription Psoas Muscle Psoas
34 chr1:227438800-227449400 Weak transcription Right Atrium heart
35 chr1:227440000-227456600 Weak transcription HepG2 liver
36 chr1:227440200-227442800 Weak transcription Placenta Amnion Placenta Amnion
37 chr1:227440200-227456800 Weak transcription HUVEC blood vessel
38 chr1:227441200-227442600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr1:227441200-227450000 Weak transcription Breast Myoepithelial Primary Cells Breast
40 chr1:227441800-227449600 Weak transcription A549 lung
41 chr1:227441800-227452000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
42 chr1:227442200-227442800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr1:227442200-227443200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr1:227442400-227443400 Enhancers K562 blood
45 chr1:227442400-227449600 Weak transcription Brain Angular Gyrus brain

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Last update: Aug 31, 2015