The 2.0 version of rSNPBase

Variant report

Variant rs1588716
Chromosome Location chr1:227433690-227433691
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227414000-227459200 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:227414200-227453800 Weak transcription HSMM muscle
3 chr1:227415800-227456800 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr1:227420800-227434600 Weak transcription Spleen Spleen
5 chr1:227424800-227440800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr1:227425400-227445200 Weak transcription Osteobl bone
7 chr1:227430600-227434000 Enhancers Brain Anterior Caudate brain
8 chr1:227430600-227434000 Enhancers Pancreas Pancrea
9 chr1:227430600-227434600 Enhancers Fetal Heart heart
10 chr1:227430800-227434200 Enhancers Gastric stomach
11 chr1:227431400-227434000 Enhancers Brain Hippocampus Middle brain
12 chr1:227431400-227434200 Enhancers Brain Cingulate Gyrus brain
13 chr1:227431600-227435400 Weak transcription NHLF lung
14 chr1:227431600-227486200 Weak transcription NHDF-Ad bronchial
15 chr1:227431800-227439200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr1:227431800-227443000 Weak transcription Rectal Mucosa Donor 29 rectum
17 chr1:227432000-227434400 Enhancers Brain Substantia Nigra brain
18 chr1:227432000-227434800 Enhancers HepG2 liver
19 chr1:227432000-227435200 Weak transcription Fetal Brain Female brain
20 chr1:227432000-227459200 Weak transcription Fetal Lung lung
21 chr1:227432200-227434200 Enhancers Right Atrium heart
22 chr1:227432200-227455400 Weak transcription Rectal Mucosa Donor 31 rectum
23 chr1:227432400-227434000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr1:227432400-227434000 Weak transcription Placenta Placenta
25 chr1:227432400-227434200 Enhancers Adipose Nuclei Adipose
26 chr1:227432400-227434200 Enhancers Left Ventricle heart
27 chr1:227432400-227434200 Enhancers Right Ventricle heart
28 chr1:227432400-227434800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr1:227432400-227434800 Enhancers HMEC breast
30 chr1:227432400-227435000 Enhancers Breast Myoepithelial Primary Cells Breast
31 chr1:227432600-227433800 Weak transcription Colon Smooth Muscle Colon
32 chr1:227432600-227434000 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
33 chr1:227432600-227434000 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
34 chr1:227432600-227434200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr1:227432600-227434200 Enhancers Lung lung
36 chr1:227432600-227434800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
37 chr1:227432600-227435200 Enhancers Liver Liver
38 chr1:227432600-227436200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr1:227432600-227448000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
40 chr1:227432800-227434800 Weak transcription Fetal Intestine Large intestine
41 chr1:227432800-227435400 Weak transcription Fetal Muscle Leg muscle
42 chr1:227432800-227435600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr1:227432800-227441600 Weak transcription Brain Angular Gyrus brain
44 chr1:227432800-227442400 Weak transcription K562 blood
45 chr1:227432800-227446000 Weak transcription HUES64 Cell Line embryonic stem cell
46 chr1:227432800-227455600 Weak transcription Duodenum Smooth Muscle Duodenum
47 chr1:227433000-227436600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
48 chr1:227433000-227438000 Weak transcription Psoas Muscle Psoas
49 chr1:227433000-227438400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
50 chr1:227433000-227441600 Weak transcription A549 lung

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Last update: Aug 31, 2015