The 2.0 version of rSNPBase

Variant report

Variant rs2670441
Chromosome Location chr1:227434681-227434682
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227414000-227459200 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:227414200-227453800 Weak transcription HSMM muscle
3 chr1:227415800-227456800 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr1:227424800-227440800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr1:227425400-227445200 Weak transcription Osteobl bone
6 chr1:227431600-227435400 Weak transcription NHLF lung
7 chr1:227431600-227486200 Weak transcription NHDF-Ad bronchial
8 chr1:227431800-227439200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr1:227431800-227443000 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr1:227432000-227434800 Enhancers HepG2 liver
11 chr1:227432000-227435200 Weak transcription Fetal Brain Female brain
12 chr1:227432000-227459200 Weak transcription Fetal Lung lung
13 chr1:227432200-227455400 Weak transcription Rectal Mucosa Donor 31 rectum
14 chr1:227432400-227434800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr1:227432400-227434800 Enhancers HMEC breast
16 chr1:227432400-227435000 Enhancers Breast Myoepithelial Primary Cells Breast
17 chr1:227432600-227434800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
18 chr1:227432600-227435200 Enhancers Liver Liver
19 chr1:227432600-227436200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr1:227432600-227448000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
21 chr1:227432800-227434800 Weak transcription Fetal Intestine Large intestine
22 chr1:227432800-227435400 Weak transcription Fetal Muscle Leg muscle
23 chr1:227432800-227435600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr1:227432800-227441600 Weak transcription Brain Angular Gyrus brain
25 chr1:227432800-227442400 Weak transcription K562 blood
26 chr1:227432800-227446000 Weak transcription HUES64 Cell Line embryonic stem cell
27 chr1:227432800-227455600 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr1:227433000-227436600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
29 chr1:227433000-227438000 Weak transcription Psoas Muscle Psoas
30 chr1:227433000-227438400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr1:227433000-227441600 Weak transcription A549 lung
32 chr1:227433000-227446000 Weak transcription ES-I3 Cell Line embryonic stem cell
33 chr1:227433000-227446000 Weak transcription HUES48 Cell Line embryonic stem cell
34 chr1:227433000-227469000 Weak transcription Aorta Aorta
35 chr1:227433200-227452800 Weak transcription Ovary ovary
36 chr1:227433400-227435000 Enhancers Skeletal Muscle Male skeletal muscle
37 chr1:227433800-227434800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr1:227434000-227434800 Weak transcription Fetal Muscle Trunk muscle
39 chr1:227434000-227435600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
40 chr1:227434000-227435800 Weak transcription Brain Anterior Caudate brain
41 chr1:227434000-227442200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr1:227434000-227444200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
43 chr1:227434000-227446800 Weak transcription Brain Inferior Temporal Lobe brain
44 chr1:227434000-227447000 Weak transcription Brain Hippocampus Middle brain
45 chr1:227434000-227453400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
46 chr1:227434200-227435200 Weak transcription Fetal Adrenal Gland Adrenal Gland
47 chr1:227434200-227435200 Weak transcription Fetal Intestine Small intestine
48 chr1:227434200-227440200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
49 chr1:227434200-227440600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr1:227434200-227442800 Weak transcription Fetal Stomach stomach

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015