Variant report
| Variant | rs1398859 |
|---|---|
| Chromosome Location | chr1:227399797-227399798 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:227333400-227405600 | Weak transcription | Adipose Nuclei | Adipose |
| 2 | chr1:227343200-227400400 | Weak transcription | A549 | lung |
| 3 | chr1:227346800-227403800 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
| 4 | chr1:227346800-227405800 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
| 5 | chr1:227346800-227406800 | Weak transcription | Fetal Kidney | kidney |
| 6 | chr1:227348200-227401600 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 7 | chr1:227348200-227408400 | Weak transcription | Fetal Muscle Trunk | muscle |
| 8 | chr1:227348200-227412200 | Weak transcription | Fetal Muscle Leg | muscle |
| 9 | chr1:227360800-227401200 | Weak transcription | Hela-S3 | cervix |
| 10 | chr1:227370000-227413600 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
| 11 | chr1:227374400-227401600 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
| 12 | chr1:227374600-227401600 | Weak transcription | Left Ventricle | heart |
| 13 | chr1:227375600-227410800 | Weak transcription | HepG2 | liver |
| 14 | chr1:227376600-227412600 | Weak transcription | Fetal Lung | lung |
| 15 | chr1:227378400-227401000 | Weak transcription | Placenta | Placenta |
| 16 | chr1:227380200-227402200 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
| 17 | chr1:227380200-227405200 | Weak transcription | Gastric | stomach |
| 18 | chr1:227380200-227421800 | Weak transcription | Ovary | ovary |
| 19 | chr1:227380400-227400000 | Weak transcription | HSMMtube | muscle |
| 20 | chr1:227380400-227400000 | Weak transcription | NHEK | skin |
| 21 | chr1:227380400-227404000 | Weak transcription | Muscle Satellite Cultured Cells | -- |
| 22 | chr1:227380400-227406800 | Weak transcription | NHDF-Ad | bronchial |
| 23 | chr1:227381600-227406600 | Weak transcription | Duodenum Mucosa | Duodenum |
| 24 | chr1:227382000-227414000 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
| 25 | chr1:227383600-227421800 | Weak transcription | Stomach Smooth Muscle | stomach |
| 26 | chr1:227385000-227400000 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 27 | chr1:227386200-227433400 | Weak transcription | Fetal Stomach | stomach |
| 28 | chr1:227386400-227413800 | Weak transcription | Brain Anterior Caudate | brain |
| 29 | chr1:227386800-227406600 | Weak transcription | Fetal Intestine Small | intestine |
| 30 | chr1:227387000-227413600 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
| 31 | chr1:227387400-227414000 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
| 32 | chr1:227390600-227413600 | Weak transcription | Small Intestine | intestine |
| 33 | chr1:227396800-227413600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 34 | chr1:227397000-227406800 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
| 35 | chr1:227397400-227399800 | Weak transcription | Fetal Brain Male | brain |
| 36 | chr1:227397400-227399800 | Weak transcription | NH-A | brain |
| 37 | chr1:227397800-227399800 | Strong transcription | HUES48 Cell Line | embryonic stem cell |
| 38 | chr1:227397800-227400400 | Strong transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 39 | chr1:227397800-227400400 | Strong transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 40 | chr1:227398000-227399800 | Strong transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 41 | chr1:227398000-227400400 | Strong transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 42 | chr1:227398000-227400400 | Strong transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 43 | chr1:227398000-227400400 | ZNF genes & repeats | K562 | blood |
| 44 | chr1:227398200-227413600 | Weak transcription | NHLF | lung |
| 45 | chr1:227398400-227400800 | Strong transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 46 | chr1:227398600-227401600 | Weak transcription | Pancreas | Pancrea |
| 47 | chr1:227398600-227407000 | Weak transcription | Lung | lung |
| 48 | chr1:227398800-227400000 | Weak transcription | Brain Angular Gyrus | brain |
| 49 | chr1:227398800-227401400 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
| 50 | chr1:227398800-227405600 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
