The 2.0 version of rSNPBase

Variant report

Variant rs2175789
Chromosome Location chr1:227354535-227354536
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227287400-227360800 Weak transcription Psoas Muscle Psoas
2 chr1:227288400-227398000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr1:227300000-227379800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr1:227317000-227374200 Weak transcription HepG2 liver
5 chr1:227326600-227355200 Weak transcription Small Intestine intestine
6 chr1:227329600-227358400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr1:227329600-227380000 Weak transcription Aorta Aorta
8 chr1:227331600-227355000 Weak transcription Brain Anterior Caudate brain
9 chr1:227331600-227358400 Weak transcription Brain Cingulate Gyrus brain
10 chr1:227332800-227354600 Weak transcription Ovary ovary
11 chr1:227333200-227354800 Weak transcription Stomach Smooth Muscle stomach
12 chr1:227333400-227358400 Weak transcription Osteobl bone
13 chr1:227333400-227359000 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr1:227333400-227381000 Weak transcription Rectal Mucosa Donor 29 rectum
15 chr1:227333400-227405600 Weak transcription Adipose Nuclei Adipose
16 chr1:227334800-227371800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr1:227343200-227400400 Weak transcription A549 lung
18 chr1:227343600-227358400 Weak transcription Colon Smooth Muscle Colon
19 chr1:227346800-227355000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr1:227346800-227357400 Weak transcription Brain Substantia Nigra brain
21 chr1:227346800-227357800 Weak transcription NHDF-Ad bronchial
22 chr1:227346800-227358000 Weak transcription Muscle Satellite Cultured Cells --
23 chr1:227346800-227358200 Weak transcription Right Ventricle heart
24 chr1:227346800-227358400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr1:227346800-227366600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr1:227346800-227379800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
27 chr1:227346800-227403800 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr1:227346800-227405800 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr1:227346800-227406800 Weak transcription Fetal Kidney kidney
30 chr1:227347200-227378000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr1:227347800-227357400 Weak transcription Left Ventricle heart
32 chr1:227347800-227363600 Weak transcription Fetal Stomach stomach
33 chr1:227347800-227385800 Weak transcription Fetal Intestine Small intestine
34 chr1:227347800-227390400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr1:227348000-227358200 Weak transcription Brain Hippocampus Middle brain
36 chr1:227348000-227358400 Weak transcription Brain Inferior Temporal Lobe brain
37 chr1:227348000-227361000 Weak transcription NHEK skin
38 chr1:227348200-227357800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr1:227348200-227358000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr1:227348200-227358000 Weak transcription HSMM muscle
41 chr1:227348200-227358200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr1:227348200-227358200 Weak transcription Brain Angular Gyrus brain
43 chr1:227348200-227361000 Weak transcription HSMMtube muscle
44 chr1:227348200-227367600 Weak transcription Cortex derived primary cultured neurospheres brain
45 chr1:227348200-227370200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
46 chr1:227348200-227370400 Weak transcription Breast Myoepithelial Primary Cells Breast
47 chr1:227348200-227371400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr1:227348200-227376400 Weak transcription Fetal Lung lung
49 chr1:227348200-227377800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
50 chr1:227348200-227377800 Weak transcription HUVEC blood vessel

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Last update: Aug 31, 2015