Variant report

Variant	rs66508463
Chromosome Location	chr6:64307279-64307280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:64306565..64309753-chr6:64343946..64347831,5	K562	blood:
2	chr6:64299036..64303200-chr6:64306803..64309022,3	K562	blood:
3	chr6:64303581..64305440-chr6:64306107..64308882,2	K562	blood:
4	chr6:64281185..64283596-chr6:64306187..64309666,3	MCF-7	breast:
5	chr6:64307189..64310027-chr6:64312721..64315208,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112245	Chromatin interaction
ENSG00000118482	Chromatin interaction
ENSG00000266680	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1062193	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11755111	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756680	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11757655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11759362	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1197892	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1210839	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1681953	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1681967	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16879705	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16894454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16894460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16894480	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16894493	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1744156	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1744163	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1872288	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1905595	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1923521	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1923522	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2075656	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2622310	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2622313	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28396397	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28635226	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2881842	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35468218	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35811627	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3800494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3857527	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4710434	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56950873	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs56977573	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57258726	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57519486	0.89[ASN][1000 genomes]
rs57899418	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58016244	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58173616	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58374599	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58779953	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59458355	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59589817	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60727297	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60863270	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61382532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61426335	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61580957	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6454298	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66500769	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs66514362	0.87[EUR][1000 genomes]
rs66559225	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66618112	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66648865	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66683185	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66769846	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66924207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66943356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66984720	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67048845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67118169	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67125777	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67260200	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67549604	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67640372	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67805256	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67879075	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67885904	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6929720	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6936079	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72880876	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72880879	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72880884	0.89[ASN][1000 genomes]
rs72882716	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72882748	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72882751	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7746492	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7766283	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7766347	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7767556	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9449520	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64284800-64307600	Weak transcription	Fetal Stomach	stomach
2	chr6:64290400-64307600	Weak transcription	Brain Angular Gyrus	brain
3	chr6:64290400-64307600	Weak transcription	Brain Substantia Nigra	brain
4	chr6:64290600-64307600	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:64291200-64307600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:64291400-64307800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:64291800-64307600	Weak transcription	Fetal Brain Female	brain
8	chr6:64294600-64307600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:64300600-64307400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:64300600-64307400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:64300800-64307400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:64301000-64307400	Weak transcription	HepG2	liver
13	chr6:64302800-64307800	Weak transcription	Fetal Brain Male	brain
14	chr6:64306200-64307600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:64306200-64307600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr6:64306200-64307600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:64306400-64307400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:64306400-64307600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:64306400-64307600	Weak transcription	Liver	Liver
20	chr6:64306400-64307800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:64307200-64307600	Weak transcription	Brain Inferior Temporal Lobe	brain

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