Variant report

Variant	rs7139324
Chromosome Location	chr12:86893859-86893860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10431399	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10735250	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10745416	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10745419	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10776961	0.94[JPT][hapmap]
rs10776969	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10776971	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10776976	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10776977	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10858412	0.94[JPT][hapmap]
rs10858425	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap]
rs10858427	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10858428	0.81[CHB][hapmap]
rs10858444	0.82[JPT][hapmap]
rs11103983	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12317113	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap]
rs12578669	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12582690	0.94[JPT][hapmap]
rs1922742	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1922749	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1955399	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2091818	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2405925	0.94[JPT][hapmap]
rs2405928	0.94[JPT][hapmap]
rs2405930	0.94[JPT][hapmap]
rs2406115	0.94[JPT][hapmap]
rs2406160	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs2897280	0.94[JPT][hapmap]
rs4265650	0.89[JPT][hapmap]
rs4370997	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs4628748	0.94[JPT][hapmap]
rs6538033	0.94[JPT][hapmap]
rs6538042	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap]
rs7299319	0.94[JPT][hapmap]
rs7303796	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7957560	0.89[JPT][hapmap]
rs7963659	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap]
rs7972484	0.89[JPT][hapmap]
rs7977689	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899395	chr12:86813367-87177972	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv899396	chr12:86863041-87276957	ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv899397	chr12:86863041-87636831	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv899398	chr12:86880442-87051310	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv899399	chr12:86880442-87177972	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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