Variant report

Variant	rs2091818
Chromosome Location	chr12:86838429-86838430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10431399	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10735250	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10745407	0.80[CEU][hapmap];0.84[JPT][hapmap]
rs10745408	0.80[CEU][hapmap];0.89[GIH][hapmap];0.84[JPT][hapmap];0.90[TSI][hapmap]
rs10745416	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10745419	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs10776955	0.80[CEU][hapmap];0.92[GIH][hapmap];0.84[JPT][hapmap];0.90[TSI][hapmap]
rs10776961	0.84[CEU][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.92[MKK][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes]
rs10776966	0.84[CEU][hapmap];0.93[TSI][hapmap]
rs10776968	0.92[AMR][1000 genomes]
rs10776969	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs10776971	0.94[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.99[MKK][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap]
rs10776976	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10776977	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10858408	0.80[CEU][hapmap];0.84[JPT][hapmap]
rs10858412	0.95[CHD][hapmap];0.94[JPT][hapmap]
rs10858419	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10858425	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap]
rs10858427	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10858428	0.96[CEU][hapmap]
rs10858444	0.82[JPT][hapmap]
rs11103983	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs12317113	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap]
rs12578669	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12582690	0.94[JPT][hapmap]
rs1463749	0.88[TSI][hapmap]
rs1493415	0.81[JPT][hapmap]
rs1922742	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1922749	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1955399	0.95[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2405923	0.96[CEU][hapmap]
rs2405925	0.84[CEU][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap]
rs2405928	0.84[CEU][hapmap];0.94[JPT][hapmap]
rs2405930	0.94[JPT][hapmap];0.86[AMR][1000 genomes]
rs2406115	0.80[CEU][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap]
rs2406116	0.80[CEU][hapmap];0.92[GIH][hapmap];0.84[JPT][hapmap];0.90[TSI][hapmap]
rs2406118	0.80[CEU][hapmap];0.92[GIH][hapmap];0.84[JPT][hapmap];0.90[TSI][hapmap]
rs2406122	0.80[CEU][hapmap];0.89[GIH][hapmap];0.84[JPT][hapmap];0.90[TSI][hapmap]
rs2406123	0.80[CEU][hapmap];0.84[JPT][hapmap]
rs2406127	0.80[CEU][hapmap];0.84[JPT][hapmap]
rs2406128	0.83[JPT][hapmap]
rs2406160	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs2452807	0.84[JPT][hapmap]
rs2465144	0.84[JPT][hapmap]
rs2471568	0.84[JPT][hapmap]
rs2471569	0.84[JPT][hapmap]
rs2897278	0.84[GIH][hapmap];0.90[TSI][hapmap]
rs2897280	0.80[CEU][hapmap];0.94[JPT][hapmap]
rs4265650	0.89[JPT][hapmap]
rs4370997	0.84[JPT][hapmap]
rs4628748	0.84[CEU][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.85[MKK][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes]
rs4842483	0.93[TSI][hapmap]
rs6538029	0.80[CEU][hapmap];0.84[JPT][hapmap]
rs6538033	0.80[CEU][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.85[TSI][hapmap]
rs6538042	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap];0.81[TSI][hapmap]
rs7135177	0.80[CEU][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.88[TSI][hapmap]
rs7137308	0.88[TSI][hapmap]
rs7139324	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7299319	0.84[CEU][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap]
rs7303796	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7953196	0.82[CEU][hapmap];0.89[JPT][hapmap]
rs7957560	0.80[CEU][hapmap];0.89[JPT][hapmap]
rs7963659	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.81[TSI][hapmap]
rs7964553	0.80[CEU][hapmap];0.84[JPT][hapmap]
rs7972484	0.80[CEU][hapmap];0.89[JPT][hapmap]
rs7973773	0.80[CEU][hapmap];0.84[JPT][hapmap]
rs7977689	0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899395	chr12:86813367-87177972	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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