Variant report

Variant	rs10431399
Chromosome Location	chr12:86819706-86819707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10735250	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs10745407	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs10745408	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs10745416	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10745419	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10776955	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs10776961	0.88[CEU][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes]
rs10776966	0.88[CEU][hapmap]
rs10776968	0.91[AMR][1000 genomes]
rs10776969	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs10776971	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10776976	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10776977	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10858408	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs10858412	0.95[JPT][hapmap]
rs10858419	0.94[AMR][1000 genomes]
rs10858425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs10858427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10858428	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[YRI][hapmap]
rs10858444	0.83[JPT][hapmap]
rs11103983	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12317113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs12578669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs12582690	0.95[JPT][hapmap]
rs1493415	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs1922742	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1922749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1955399	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2091818	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2131565	0.81[CEU][hapmap]
rs2405923	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs2405925	0.89[CEU][hapmap];0.95[JPT][hapmap]
rs2405928	0.89[CEU][hapmap];0.95[JPT][hapmap]
rs2405930	0.95[JPT][hapmap];0.82[AMR][1000 genomes]
rs2406115	0.84[CEU][hapmap];0.95[JPT][hapmap]
rs2406116	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs2406118	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs2406122	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs2406123	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs2406127	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs2406128	0.84[JPT][hapmap]
rs2406160	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs2452806	0.81[CEU][hapmap]
rs2452807	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs2465144	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs2471560	0.84[JPT][hapmap]
rs2471568	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs2471569	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs2897278	0.81[CEU][hapmap]
rs2897280	0.85[CEU][hapmap];0.95[JPT][hapmap]
rs4265650	0.82[CEU][hapmap];0.89[JPT][hapmap]
rs4370997	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs4628748	0.88[CEU][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes]
rs4842483	0.82[CEU][hapmap]
rs6538029	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs6538033	0.84[CEU][hapmap];0.95[JPT][hapmap]
rs6538042	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs6538046	0.81[YRI][hapmap]
rs7135177	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs7139324	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7297574	0.82[YRI][hapmap]
rs7299319	0.88[CEU][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap]
rs7303796	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7953196	0.88[CEU][hapmap];0.89[JPT][hapmap]
rs7957560	0.85[CEU][hapmap];0.90[JPT][hapmap]
rs7963659	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs7964553	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs7972484	0.85[CEU][hapmap];0.90[JPT][hapmap]
rs7973543	0.86[YRI][hapmap]
rs7973773	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs7977689	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899395	chr12:86813367-87177972	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links