Variant report

Variant	rs7977689
Chromosome Location	chr12:86877048-86877049
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10431399	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10735250	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs10745416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10745419	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10776961	0.89[JPT][hapmap]
rs10776968	0.86[AMR][1000 genomes]
rs10776969	0.95[JPT][hapmap]
rs10776971	0.83[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap]
rs10776976	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10776977	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10858412	0.89[JPT][hapmap]
rs10858419	0.88[AMR][1000 genomes]
rs10858425	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10858427	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10858428	0.80[CEU][hapmap]
rs11103983	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12317113	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12578669	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12582690	0.90[JPT][hapmap]
rs1922742	1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1922749	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1955399	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2091818	0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap]
rs2405923	0.83[CEU][hapmap]
rs2405925	0.90[JPT][hapmap];0.87[YRI][hapmap]
rs2405928	0.90[JPT][hapmap]
rs2405930	0.89[JPT][hapmap]
rs2406115	0.89[JPT][hapmap]
rs2406160	0.91[CEU][hapmap];0.84[CHB][hapmap]
rs2897280	0.90[JPT][hapmap]
rs4265650	0.84[JPT][hapmap]
rs4370997	0.82[CHB][hapmap]
rs4628748	0.89[JPT][hapmap]
rs4842483	0.83[CEU][hapmap]
rs6538033	0.90[JPT][hapmap]
rs6538042	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7139324	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7299319	0.89[JPT][hapmap]
rs7303796	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7957560	0.85[JPT][hapmap]
rs7963659	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7972484	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899395	chr12:86813367-87177972	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv899396	chr12:86863041-87276957	ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv899397	chr12:86863041-87636831	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86872400-86878200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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