Variant report

Variant	rs11165250
Chromosome Location	chr1:95264616-95264617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11165239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165257	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12057287	1.00[EUR][1000 genomes]
rs12058606	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12058766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059284	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12060754	0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12063764	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12077638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12078728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12081570	1.00[EUR][1000 genomes]
rs12083162	1.00[EUR][1000 genomes]
rs12085965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12086647	1.00[EUR][1000 genomes]
rs12086825	1.00[EUR][1000 genomes]
rs12089732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12091334	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12091567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095617	1.00[EUR][1000 genomes]
rs3916208	1.00[EUR][1000 genomes]
rs3931243	1.00[EUR][1000 genomes]
rs56004399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56075866	1.00[EUR][1000 genomes]
rs56088880	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56252039	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56989877	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58484675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59906561	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60642625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61371315	1.00[EUR][1000 genomes]
rs61634360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6665321	1.00[EUR][1000 genomes]
rs72956408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72956422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72956423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72956425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72974472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72974480	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101525	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101528	1.00[EUR][1000 genomes]
rs74101530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7540383	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95242600-95268000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:95243200-95265000	Weak transcription	Fetal Intestine Large	intestine
3	chr1:95251000-95271600	Weak transcription	Small Intestine	intestine
4	chr1:95256000-95264800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:95256800-95265800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:95258200-95267800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:95258200-95284800	Weak transcription	Gastric	stomach
8	chr1:95259200-95264800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr1:95259200-95266600	Weak transcription	A549	lung
10	chr1:95259200-95267400	Weak transcription	Fetal Muscle Leg	muscle
11	chr1:95259400-95264800	Weak transcription	Fetal Intestine Small	intestine
12	chr1:95259400-95266400	Weak transcription	Colon Smooth Muscle	Colon
13	chr1:95259400-95267000	Weak transcription	Fetal Stomach	stomach
14	chr1:95259400-95267200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr1:95259400-95267200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr1:95259400-95267200	Weak transcription	Stomach Mucosa	stomach
17	chr1:95259400-95267200	Weak transcription	HSMMtube	muscle
18	chr1:95259600-95265600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr1:95259600-95267200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:95259600-95267200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr1:95259600-95267800	Weak transcription	Left Ventricle	heart
22	chr1:95260800-95267400	Enhancers	HepG2	liver
23	chr1:95261400-95264800	Weak transcription	NHDF-Ad	bronchial
24	chr1:95261400-95266800	Weak transcription	Dnd41	blood
25	chr1:95261400-95267200	Weak transcription	Primary T cells from cord blood	blood
26	chr1:95261400-95267200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr1:95261600-95267200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr1:95261600-95268200	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr1:95261800-95267800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr1:95261800-95267800	Weak transcription	Pancreas	Pancrea
31	chr1:95261800-95267800	Weak transcription	Spleen	Spleen
32	chr1:95261800-95269200	Weak transcription	Lung	lung
33	chr1:95262200-95267000	Weak transcription	HUVEC	blood vessel
34	chr1:95262400-95265000	Enhancers	Adipose Nuclei	Adipose
35	chr1:95262600-95267800	Weak transcription	Placenta	Placenta
36	chr1:95262800-95265200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr1:95262800-95267000	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr1:95262800-95267800	Weak transcription	Ovary	ovary
39	chr1:95263000-95267400	Weak transcription	HSMM	muscle
40	chr1:95263400-95265000	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr1:95263400-95265000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr1:95263400-95265000	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr1:95263600-95266400	Weak transcription	Brain Hippocampus Middle	brain
44	chr1:95264000-95266200	Weak transcription	NHLF	lung
45	chr1:95264200-95265400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr1:95264200-95265800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr1:95264200-95267200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr1:95264400-95266200	Weak transcription	Fetal Kidney	kidney
49	chr1:95264400-95267200	Weak transcription	Fetal Lung	lung
50	chr1:95264400-95267200	Enhancers	HMEC	breast

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