The 2.0 version of rSNPBase

Variant report

Variant rs56075866
Chromosome Location chr1:95271948-95271949
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95258200-95284800 Weak transcription Gastric stomach
2 chr1:95267200-95275200 Enhancers Fetal Intestine Large intestine
3 chr1:95267400-95272600 Enhancers Fetal Muscle Leg muscle
4 chr1:95267800-95272000 Weak transcription Primary T cells from cord blood blood
5 chr1:95267800-95272200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
6 chr1:95268000-95272000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr1:95268200-95272200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
8 chr1:95268200-95272400 Enhancers Brain Hippocampus Middle brain
9 chr1:95268200-95273800 Weak transcription H1 Cell Line embryonic stem cell
10 chr1:95268200-95274200 Weak transcription iPS-18 Cell Line embryonic stem cell
11 chr1:95268200-95276800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
12 chr1:95268200-95285000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
13 chr1:95268400-95272600 Weak transcription Dnd41 blood
14 chr1:95269000-95273800 Weak transcription iPS-20b Cell Line embryonic stem cell
15 chr1:95269000-95282400 Weak transcription Right Atrium heart
16 chr1:95269600-95272000 Weak transcription Duodenum Mucosa Duodenum
17 chr1:95269600-95272000 Weak transcription Ovary ovary
18 chr1:95269600-95272200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr1:95269800-95272000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
20 chr1:95269800-95272000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr1:95269800-95272000 Weak transcription Brain Germinal Matrix brain
22 chr1:95269800-95272000 Weak transcription Fetal Lung lung
23 chr1:95269800-95272200 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr1:95269800-95272200 Weak transcription Sigmoid Colon Sigmoid Colon
25 chr1:95269800-95273400 Weak transcription Placenta Placenta
26 chr1:95269800-95274000 Weak transcription ES-WA7 Cell Line embryonic stem cell
27 chr1:95269800-95275400 Enhancers Fetal Intestine Small intestine
28 chr1:95270000-95272000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr1:95270000-95273600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
30 chr1:95270000-95285000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr1:95270200-95272000 Weak transcription Colonic Mucosa Colon
32 chr1:95270200-95272200 Weak transcription Breast Myoepithelial Primary Cells Breast
33 chr1:95270400-95272200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
34 chr1:95270400-95284800 Weak transcription Placenta Amnion Placenta Amnion
35 chr1:95271000-95275400 Enhancers Fetal Adrenal Gland Adrenal Gland
36 chr1:95271400-95272600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr1:95271400-95274800 Enhancers Rectal Mucosa Donor 31 rectum
38 chr1:95271600-95272200 Active TSS Brain Angular Gyrus brain
39 chr1:95271600-95272200 Active TSS Stomach Smooth Muscle stomach
40 chr1:95271600-95272400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr1:95271600-95272400 Enhancers HUES64 Cell Line embryonic stem cell
42 chr1:95271600-95272400 Enhancers Primary neutrophils fromperipheralblood blood
43 chr1:95271600-95272400 Enhancers Brain Cingulate Gyrus brain
44 chr1:95271600-95272400 Enhancers Brain Inferior Temporal Lobe brain
45 chr1:95271600-95272400 Enhancers Small Intestine intestine
46 chr1:95271600-95272400 Flanking Active TSS HUVEC blood vessel
47 chr1:95271600-95272400 Enhancers NH-A brain
48 chr1:95271600-95272400 Enhancers NHEK skin
49 chr1:95271600-95272600 Enhancers Cortex derived primary cultured neurospheres brain
50 chr1:95271600-95272600 Enhancers Fetal Brain Male brain

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Last update: Aug 31, 2015