The 2.0 version of rSNPBase

Variant report

Variant rs12086825
Chromosome Location chr1:95270177-95270178
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95251000-95271600 Weak transcription Small Intestine intestine
2 chr1:95258200-95284800 Weak transcription Gastric stomach
3 chr1:95267000-95270200 Enhancers Fetal Stomach stomach
4 chr1:95267000-95270200 Enhancers Rectal Mucosa Donor 31 rectum
5 chr1:95267200-95270400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
6 chr1:95267200-95270400 Enhancers Stomach Mucosa stomach
7 chr1:95267200-95275200 Enhancers Fetal Intestine Large intestine
8 chr1:95267400-95270200 Enhancers Colonic Mucosa Colon
9 chr1:95267400-95272600 Enhancers Fetal Muscle Leg muscle
10 chr1:95267800-95270200 Enhancers Breast Myoepithelial Primary Cells Breast
11 chr1:95267800-95270200 Enhancers Cortex derived primary cultured neurospheres brain
12 chr1:95267800-95270400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
13 chr1:95267800-95270600 Enhancers Fetal Adrenal Gland Adrenal Gland
14 chr1:95267800-95270800 Enhancers Brain Angular Gyrus brain
15 chr1:95267800-95271600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
16 chr1:95267800-95271600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr1:95267800-95271600 Weak transcription Fetal Brain Male brain
18 chr1:95267800-95271600 Weak transcription HUVEC blood vessel
19 chr1:95267800-95271800 Enhancers Rectal Mucosa Donor 29 rectum
20 chr1:95267800-95272000 Weak transcription Primary T cells from cord blood blood
21 chr1:95267800-95272200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
22 chr1:95268000-95270200 Enhancers Brain Inferior Temporal Lobe brain
23 chr1:95268000-95270400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
24 chr1:95268000-95270400 Enhancers Colon Smooth Muscle Colon
25 chr1:95268000-95271600 Weak transcription HUES64 Cell Line embryonic stem cell
26 chr1:95268000-95271600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
27 chr1:95268000-95271800 Weak transcription Primary B cells from cord blood blood
28 chr1:95268000-95272000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr1:95268200-95270200 Enhancers Stomach Smooth Muscle stomach
30 chr1:95268200-95271400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr1:95268200-95271600 Weak transcription Primary monocytes fromperipheralblood blood
32 chr1:95268200-95271600 Weak transcription Primary neutrophils fromperipheralblood blood
33 chr1:95268200-95271600 Weak transcription Monocytes-CD14+_RO01746 blood
34 chr1:95268200-95271600 Weak transcription NHEK skin
35 chr1:95268200-95271800 Weak transcription HUES48 Cell Line embryonic stem cell
36 chr1:95268200-95272200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
37 chr1:95268200-95272400 Enhancers Brain Hippocampus Middle brain
38 chr1:95268200-95273800 Weak transcription H1 Cell Line embryonic stem cell
39 chr1:95268200-95274200 Weak transcription iPS-18 Cell Line embryonic stem cell
40 chr1:95268200-95276800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
41 chr1:95268200-95285000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
42 chr1:95268400-95272600 Weak transcription Dnd41 blood
43 chr1:95268600-95270400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr1:95268800-95270200 Enhancers Adipose Nuclei Adipose
45 chr1:95269000-95270200 Enhancers Left Ventricle heart
46 chr1:95269000-95273800 Weak transcription iPS-20b Cell Line embryonic stem cell
47 chr1:95269000-95282400 Weak transcription Right Atrium heart
48 chr1:95269200-95271600 Weak transcription Primary hematopoietic stem cells short term culture blood
49 chr1:95269400-95271200 Enhancers HepG2 liver
50 chr1:95269400-95271600 Weak transcription Fetal Brain Female brain

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Last update: Aug 31, 2015