The 2.0 version of rSNPBase

Variant report

Variant rs12059284
Chromosome Location chr1:95297230-95297231
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95286400-95298800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:95286600-95311800 Weak transcription Placenta Placenta
3 chr1:95286600-95319800 Weak transcription Lung lung
4 chr1:95287000-95306200 Weak transcription Aorta Aorta
5 chr1:95287000-95308200 Weak transcription Brain Substantia Nigra brain
6 chr1:95287000-95319800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr1:95287200-95302400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr1:95287800-95299000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
9 chr1:95287800-95320200 Weak transcription Rectal Smooth Muscle rectum
10 chr1:95288000-95298600 Weak transcription Cortex derived primary cultured neurospheres brain
11 chr1:95288400-95312400 Weak transcription Fetal Muscle Leg muscle
12 chr1:95289000-95306400 Weak transcription Fetal Kidney kidney
13 chr1:95289200-95314800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr1:95289200-95318600 Weak transcription HSMMtube muscle
15 chr1:95290400-95298400 Strong transcription Fetal Intestine Large intestine
16 chr1:95291200-95298400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr1:95291400-95307000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr1:95293400-95306200 Weak transcription HepG2 liver
19 chr1:95293600-95298600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
20 chr1:95293600-95308000 Weak transcription Stomach Mucosa stomach
21 chr1:95293600-95319800 Weak transcription Esophagus oesophagus
22 chr1:95293600-95320000 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr1:95293800-95306400 Weak transcription Placenta Amnion Placenta Amnion
24 chr1:95294000-95320400 Weak transcription Small Intestine intestine
25 chr1:95294200-95307200 Weak transcription Fetal Muscle Trunk muscle
26 chr1:95294400-95298000 Weak transcription Liver Liver
27 chr1:95294400-95298200 Weak transcription Fetal Adrenal Gland Adrenal Gland
28 chr1:95294400-95298600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
29 chr1:95294400-95306000 Weak transcription Gastric stomach
30 chr1:95294600-95298000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr1:95294600-95298600 Weak transcription Fetal Stomach stomach
32 chr1:95294600-95303600 Weak transcription Sigmoid Colon Sigmoid Colon
33 chr1:95294600-95306200 Weak transcription Colonic Mucosa Colon
34 chr1:95295200-95306000 Weak transcription Pancreas Pancrea
35 chr1:95295600-95303200 Weak transcription Duodenum Mucosa Duodenum
36 chr1:95296400-95297600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
37 chr1:95296600-95297600 Strong transcription Rectal Mucosa Donor 31 rectum
38 chr1:95296600-95297800 Bivalent Enhancer Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr1:95296600-95298800 Enhancers Primary neutrophils fromperipheralblood blood
40 chr1:95296600-95299000 Enhancers Primary monocytes fromperipheralblood blood
41 chr1:95296600-95299200 Enhancers Breast Myoepithelial Primary Cells Breast
42 chr1:95296800-95297400 Bivalent Enhancer Primary B cells from peripheral blood blood
43 chr1:95296800-95298000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr1:95297000-95297400 Bivalent Enhancer Primary B cells from cord blood blood
45 chr1:95297000-95297400 Bivalent Enhancer Primary hematopoietic stem cells short term culture blood
46 chr1:95297000-95297800 Enhancers Primary hematopoietic stem cells blood
47 chr1:95297000-95298200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr1:95297000-95298600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr1:95297200-95297400 Flanking Active TSS Monocytes-CD14+_RO01746 blood
50 chr1:95297200-95298800 Weak transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015