The 2.0 version of rSNPBase

Variant report

Variant rs56989877
Chromosome Location chr1:95261985-95261986
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95242600-95268000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
2 chr1:95243200-95265000 Weak transcription Fetal Intestine Large intestine
3 chr1:95251000-95271600 Weak transcription Small Intestine intestine
4 chr1:95256000-95264800 Enhancers Breast Myoepithelial Primary Cells Breast
5 chr1:95256800-95265800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr1:95257400-95262000 Enhancers Primary B cells from peripheral blood blood
7 chr1:95258200-95267800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr1:95258200-95284800 Weak transcription Gastric stomach
9 chr1:95259000-95262200 Enhancers HUVEC blood vessel
10 chr1:95259200-95263000 Weak transcription Fetal Lung lung
11 chr1:95259200-95263800 Weak transcription Primary hematopoietic stem cells short term culture blood
12 chr1:95259200-95264800 Weak transcription Cortex derived primary cultured neurospheres brain
13 chr1:95259200-95266600 Weak transcription A549 lung
14 chr1:95259200-95267400 Weak transcription Fetal Muscle Leg muscle
15 chr1:95259400-95262200 Weak transcription Placenta Placenta
16 chr1:95259400-95263200 Weak transcription Brain Hippocampus Middle brain
17 chr1:95259400-95264200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr1:95259400-95264600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
19 chr1:95259400-95264600 Weak transcription NH-A brain
20 chr1:95259400-95264800 Weak transcription Fetal Intestine Small intestine
21 chr1:95259400-95266400 Weak transcription Colon Smooth Muscle Colon
22 chr1:95259400-95267000 Weak transcription Fetal Stomach stomach
23 chr1:95259400-95267200 Weak transcription HUES64 Cell Line embryonic stem cell
24 chr1:95259400-95267200 Weak transcription Skeletal Muscle Male skeletal muscle
25 chr1:95259400-95267200 Weak transcription Stomach Mucosa stomach
26 chr1:95259400-95267200 Weak transcription HSMMtube muscle
27 chr1:95259600-95262400 Weak transcription NHLF lung
28 chr1:95259600-95262800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr1:95259600-95263800 Weak transcription HMEC breast
30 chr1:95259600-95264200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr1:95259600-95264600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr1:95259600-95264600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr1:95259600-95264600 Weak transcription Muscle Satellite Cultured Cells --
34 chr1:95259600-95265600 Weak transcription Duodenum Smooth Muscle Duodenum
35 chr1:95259600-95267200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr1:95259600-95267200 Weak transcription Skeletal Muscle Female skeletal muscle
37 chr1:95259600-95267800 Weak transcription Left Ventricle heart
38 chr1:95260000-95262000 Enhancers Adipose Nuclei Adipose
39 chr1:95260200-95263000 Enhancers Primary monocytes fromperipheralblood blood
40 chr1:95260800-95263000 Enhancers Fetal Adrenal Gland Adrenal Gland
41 chr1:95260800-95267400 Enhancers HepG2 liver
42 chr1:95261400-95262600 Weak transcription Fetal Kidney kidney
43 chr1:95261400-95264800 Weak transcription NHDF-Ad bronchial
44 chr1:95261400-95266800 Weak transcription Dnd41 blood
45 chr1:95261400-95267200 Weak transcription Primary T cells from cord blood blood
46 chr1:95261400-95267200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
47 chr1:95261600-95267200 Weak transcription Primary hematopoietic stem cells blood
48 chr1:95261600-95268200 Enhancers Primary neutrophils fromperipheralblood blood
49 chr1:95261800-95262200 Weak transcription Ovary ovary
50 chr1:95261800-95263400 Weak transcription Monocytes-CD14+_RO01746 blood

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Last update: Aug 31, 2015